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Detail for ZS11_A04G02030.t1

Genome:
ZS11: ZS11_A04G02030.t1
ZS11_v0: BnaA04T0017800ZS
WE: WE_A04G01980.t1
WE_v0: BnaA04T0016900WE
Darmor: A04p01810.1_BnaDAR
BH: BnaA04T017200BH
Quinta: BnaA04T0009600QU
ZS2: BnaA04T018900ZS2
SW: BnaA04T020900SW
Express61: A04p001620.1_BnaEXP
Xiaoyun: BnaA04G0018300XY
P202: BnaC04G023030P202.1
BL: BnaA04T017200BH
TA: BnaA04T019100TA
Da-Ae: Not available
RB: BnaA04T020900RB
No2127: BnaC04T0267800NO.2
P130: BnaA04G001720P130.1
Length: 170
KOG ID: KOG3363
KOG E-value: 3.000000e-109
KOG Score: 310.0
KOG Annotation: Function unknown
Biological Process: GO:0032981(mitochondrial respiratory chain complex I assembly)
Cellular Component: -
Molecular Function: -
KEGG Ortholog: K09008 NDUFAF3; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
NR Protein: RID64948.1
NR E-value: 1.800000e-90
NR Score: 337.0
NR Annotation: RID64948.1 hypothetical protein BRARA_D00181 [Brassica rapa]
SwissProt Protein: Q6DFN1|NDUF3_XENTR
SwissProt E-value: 2.130000e-16
SwissProt Score: 75.9
SwissProt Annotation: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis OX=8364 GN=ndufaf3 PE=2 SV=1
CDS Sequence (520 bp)
ATGGCGGTGAGACAGAAAGCTATGGCGACGTTGCCGAAGCTGATCCGAGCCATGAGAAATGAATCTCCGA
AGCATCACAACCTCGTCTTGCCATCTCTGAGAAGAGCTTTCTCTCTCTACGATCAGATCAACCTCATCGA
CAACGTCCCCGAGGATCAACTTCGGTTTCAGGAATTTGATGAGACGAGTTTCACGGTGAATGGGGTTAAG
TACGATGGGAGCTTGCTCTCTGTTGGGAACTTGCTGATGTCATGGAGCCCTCGTAGCTTCTCTGAGATCA
CAACCGATAGCTTGTCAATCTTCCAGACTGTTCGGCCAATTCCAGAGCTCTTAATCATCGGCTGTGGAAG
ATACAATCATCCAGTGAATCCACAAGTTAGACAGTTTGTAAAGTCAATTGGCATGAAGCTAGAAACTCTT
GACTCTAGAAATGCTGCATCGACTTACAACATACTGAATGAGGAAGGCAGGATCGTGGCGGCTGCGTTGC
TTCCTTATGGAGTTACATCCTAA
Upstream Sequence
GTTCGTTAAAGTCTAGTCGTTTCGAATGATAAATCGTTTGGAGACGGGGGGAGATGGCGGTGAGACAGAA
AGCTATGGCGACGTTGCCGAAGCTGATCCGAGCCATGAGAAATGAATCTCCGAAGCATCACAACCTCGTC
TTGCCATCTCTGAGAAGAGCTTTCTCTCTCTACGATCAGATCAACCTCATCGACAACGTCCCCGAGGATC
AACTTCGGTTTCAGGAATTTGATGAGACGAGTTTCACGGTGAATGGGGTTAAGTACGATGGGAGCTTGCT
CTCTGTTGGGAACTTGCTGATGTCATGGAGCCCTCGTAGCTTCTCTGAGATCACAACCGATAGCTTGTCA
ATCTTCCAGACTGTTCGGCCAATTCCAGAGCTCTTAATCATCGGCTGTGGAAGATACAATCATCCAGTGA
ATCCACAAGTTAGACAGTTTGTAAAGTCAATTGGCATGAAGCTAGAAACTCTTGACTCTAGAAATGCTGC
ATCGACTTACAACATACTGAATGAGGAAGGCAGGATCGTGGCGGCTGCGTTGCTTCCTTATGGAGTTACA
TCCTAACTCCTAACCTCAGAGATTATCTTTTCTGATGAAACACCAGCATGGTTTGTAAATGAAATGTTTC
ACATTCAGTTGTTTTCCGAAACTTTTGTAAACGAATCAACTTTTCAATAGTTATGTTTTAGAGGGTAAGT
AACAGTACTATTGCAACATTGAAACTTTTATTGTCTCTTACAGCTTCAATAAAACTGAGC
Downstream Sequence
AGTAATCATACCAAACCCACCTCCCATTCTCTCTGATTCGTTCTCCTGATTTGAAAATTT
GTTGTGTTTCATCACAAAGTTGGAACCTTTTGTTGGGCTCTTGATTTGAAATTTCGTTGT
GTTTCGTCGTAAAGTTGGAACCTTTGGAACATTTTGTTGGGTTTGTCAATTGAAGTTTGG
ATTTTGGATATGTAGTGGTTAGATTAGTGGTGGGTTTGTCTTTGGTTATGCAGATTTGAT
GAGACGAGTTTCACGGTGAATGGGGTTAAGTACGATGGGAGCTTGCTCTCTGTTGGGAAC
TTGCTGATGTCATGGAGCCCTCGTAGCTTCTCTGAGATCACAACCGATAGGTACCGTCTC
TCTCTCTCTCTCTCTCTCTCTTATGAAGTGTTGTAAGTTTTGGTAAAACACTTGACATGT
CTCTATTCTAATGGATGCAGCTTGTCAATCTTCCAGACTGTTCGGCCAATTCCAGGTACA
ATCTTAACCTTTTGCACATATTGAAGTGTATCATCTCAGTGATTTATGACTCTCATTGTC
TCTCTAACACTTTCTAGAGCTCTTAATCATCGGCTGTGGAAGATACAATCATCCAGTGAA
TCCACAAGTTAGACAGTTTGTAAAGTCAATTGGCATGAAGCTAGAAACTCTTGACTCTGT
ATGTCTATCCCTCTCAAGATTCCCTTATCATCATGCTTTGGTTATGTTGGGTTTGGAGTT
ATTTGTATGTGGTTATTGATTGAACTCTCTGTTTCTATCCAGAGAAATGCTGCATCGACT
TACAACATACTGAATGAGGAAGGCAGGATCGTGGCGGCTGCGTTGCTTCCTTATGGAGTT
ACATCCTAACTCCTAACCTCAGAGATTATCTTTTCTGATGAAACACCAGCATGGTTTGTA
AATGAAATGTTTCACATTCAGTTGTTTTCCGAAACTTTTGTAAACGAATCAACTTTTCAA
TAGTTATGTTTTAGAGGGTAAGTAACAGTACTATTGCAACATTGAAACTTTTATTGTCTC
TTACAGCTTCAATAAAACTGAGCTTTATCTGGAAAACAGACAGTAGTTTCCTGATCTCAT
TGAATACTCCTTTACGAGTTTCGGAGAAAGAGATTCTTCCCTCTCTAGTAGTTTTGTAGG
TGAGTCAAACATGGAAAAAGTGGTTTAGACCTCATAACTAAATGTGTATGTAGCTTGAAA
GCACATGTATATTGTTCTTACAATCACTTAGAACCAGAACAAGATCACTCCTGATCAATG
AATGGATTCTGTGAGCAATAGTCAACATTTTTTGCTTTTTTTTTTTTTTGATGTTTAGAT
TCTTTTGTATCACACCATCTCTCAGCAGAATCAACATAGTATAAAGAGTGTTTTGTTAAA
GTTAAATCAGAAAAGATTTTTGAAGTATTTTTAGCTCCCATGTTTCAAGATCAGTATACT
GAGTTAGAGGGTCTAGATTCACTCTGCCTGTTCCATCAAACAGTGCAGGATCTTGAGGAA
TAATCCCAAGCACACCAACCTGGTATGATTGCCATTTCCAAATCCAGAACGCTTTGATGA
CTTGTTTGAACATTGACACGCATGTAGTTAATTATCTCACCTCTCCTCCTGTGTGGCTTT
GCCGAGACTGGCTCGATAATAGTAAACCATTTTGGCGTCTTTTTGGTATAAACCTTTGTT
ATAAAGTTTACTTTTTCACTACACGTGTTGGAGTCGAGGCAAAATAGTATCAAAGAGAAA
AAGAACTTAATCTGAGGTCTAATAATAGTTTTCTTTCGTCAGAGTTCTTTGTTGGCGGAA
ACAAACAGTAAGAGTAGAGGATTCACCGGTGGTAAAGGTGGAACCTCAGCTCTACACAAT
GGACACGTCGAAGACATTTCACCAAGCCATGGATCGATACAATCCGCGTGGAAACAGTGG
CGACAAATCGTCAACCTCCTCATCTTATCTCCTTCCTCTGCCTCTTGCAAACACACGGCG
CAATACAACGGAGACGAATG
Pro Sequence
MAVRQKAMATLPKLIRAMRNESPKHHNLVLPSLRRAFSLYDQINLIDNVP
EDQLRFQEFDETSFTVNGVKYDGSLLSVGNLLMSWSPRSFSEITTDSLSI
FQTVRPIPELLIIGCGRYNHPVNPQVRQFVKSIGMKLETLDSRNAASTYN
ILNEEGRIVAAALLPYGVTS
mRNA Sequence
GTTCGTTAAAGTCTAGTCGTTTCGAATGATAAATCGTTTGGAGACGGGGGGAGATGGCGGTGAGACAGAA
AGCTATGGCGACGTTGCCGAAGCTGATCCGAGCCATGAGAAATGAATCTCCGAAGCATCACAACCTCGTC
TTGCCATCTCTGAGAAGAGCTTTCTCTCTCTACGATCAGATCAACCTCATCGACAACGTCCCCGAGGATC
AACTTCGGTTTCAGGAATTTGATGAGACGAGTTTCACGGTGAATGGGGTTAAGTACGATGGGAGCTTGCT
CTCTGTTGGGAACTTGCTGATGTCATGGAGCCCTCGTAGCTTCTCTGAGATCACAACCGATAGCTTGTCA
ATCTTCCAGACTGTTCGGCCAATTCCAGAGCTCTTAATCATCGGCTGTGGAAGATACAATCATCCAGTGA
ATCCACAAGTTAGACAGTTTGTAAAGTCAATTGGCATGAAGCTAGAAACTCTTGACTCTAGAAATGCTGC
ATCGACTTACAACATACTGAATGAGGAAGGCAGGATCGTGGCGGCTGCGTTGCTTCCTTATGGAGTTACA
TCCTAACTCCTAACCTCAGAGATTATCTTTTCTGATGAAACACCAGCATGGTTTGTAAATGAAATGTTTC
ACATTCAGTTGTTTTCCGAAACTTTTGTAAACGAATCAACTTTTCAATAGTTATGTTTTAGAGGGTAAGT
AACAGTACTATTGCAACATTGAAACTTTTATTGTCTCTTACAGCTTCAATAAAACTGAGC