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Detail for ZS11_A01G00230.t1

Genome:
ZS11: ZS11_A01G00230.t1
ZS11_v0: BnaC07T0545200ZS
WE: WE_scaffold0003G02870.t1
WE_v0: BnaC03T0583800WE
Darmor: C01p00400.1_BnaDAR
BH: BnaC08T457400BH
Quinta: BnaC08T0450800QU
ZS2: BnaC08T420600ZS2
SW: BnaC08T452200SW
Express61: C01p000380.2_BnaEXP
Xiaoyun: BnaC08G0442800XY
P202: BnaC04G035470P202.1
BL: BnaC08T457400BH
TA: BnaC03T660700TA
Da-Ae: rna-gnl|WGS:JAGKQM|BnaA01g00420D
RB: BnaC08T452300RB
No2127: BnaC07T0519800NO
P130: BnaC03G073990P130.1
Length: 108
KOG ID: KOG1767
KOG E-value: 9.930000e-76
KOG Score: 220.0
KOG Annotation: Translation, ribosomal structure and biogenesis
Biological Process: -
Cellular Component: -
Molecular Function: -
KEGG Ortholog: K02975 RP-S25e, RPS25; small subunit ribosomal protein S25e
NR Protein: NP_195631.1
NR E-value: 8.600000e-38
NR Score: 161.4
NR Annotation: NP_195631.1 Ribosomal protein S25 family protein [Arabidopsis thaliana]
SwissProt Protein: Q9T029|RS254_ARATH
SwissProt E-value: 4.210000e-75
SwissProt Score: 220.0
SwissProt Annotation: 40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1
CDS Sequence (331 bp)
ATGGCGCCGAAGAAGGATAAGGTTCCACCGCCGTCATCTAAGCCGGCCAAATCCGGAGGTGGAAAGCAGA
AGAAGAAGAAGTGGAGCAAGGGGAAGCAAAAGGAGAAGGTGAACAACATGGTGTTGTTTGATCAGGCTAC
TTACGACAAGCTTCTCACCGAAGCTCCCAAGTTCAAGCTCATCACTCCTTCCATTCTCTCTGACCGTATG
AGGATTAACGGTTCTCTAGCAAGGAGGGCGATTAGGGAGCTGATGGCCAAAGGTGTGATCAGGATGGTCG
CTGCTCACTCTAGCCAGCAGATCTACACTCGTGCCACCAACACTTAA
Upstream Sequence
TAAGGGAGAACAAACTCTAGTTTGTTTAATACCTCAGCCTCCTCCTCCTCCTCATTTTTCAGCTTCTCCT
TCGCCGTTCGCTTCTCCGTCCAAACCAACATGGCGCCGAAGAAGGATAAGGTTCCACCGCCGTCATCTAA
GCCGGCCAAATCCGGAGGTGGAAAGCAGAAGAAGAAGAAGTGGAGCAAGGGGAAGCAAAAGGAGAAGGTG
AACAACATGGTGTTGTTTGATCAGGCTACTTACGACAAGCTTCTCACCGAAGCTCCCAAGTTCAAGCTCA
TCACTCCTTCCATTCTCTCTGACCGTATGAGGATTAACGGTTCTCTAGCAAGGAGGGCGATTAGGGAGCT
GATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCTAGCCAGCAGATCTACACTCGTGCCACCAAC
ACTTAAAAAAAATATGTTTTGTTCGTGATTGAGCTTTGGCCTTCGATTTGTTTTTGGTTACATTGTTTGA
TTACTTCTTCAGGAACTCAATAGAATACTGGTTTTGGTTCCGTTTAAGATTGCATTGAGATTACTAAATT
TGATTCAACCAGTGGCTTCATTTGTTAA
Downstream Sequence
GTATCACTACTGTTTCTTTTCTGTTTATGTCTAAGCAGATCTATTTATCTCGTATTAATC
GTTACAATTCGTGTTACTTGTTACAGGCGCCGAAGAAGGATAAGGTTCCACCGCCGTCAT
CTAAGCCGGCCAAATCCGGAGGTGGAAAGCAGAAGAAGAAGGTTCGTTTTCTATCATGTC
CTCTATTAACATATGCATGTTAGCTACATTTGGGTTTCTGTGAACTGTCATGTTTAATAA
GTTGAGTTGGTGAAATGATGAATACTTTTGTTTGACTATTGATATTGGTATCATTGTTGA
ATGTTGTGGATAACAGAAGTGGAGCAAGGGGAAGCAAAAGGAGAAGGTGAACAACATGGT
GTTGTTTGATCAGGCTACTTACGACAAGCTTCTCACCGAAGCTCCCAAGTTCAAGCTCAT
CACTCCTTCCATTCTCTCTGACCGTATGAGGGTATAATTTTTATATGATCTAAGAATAAC
ACTCTGGTCCGTATTAGTAATAATATAATTAATATGATCTTAAGCATAACACTCTGATGA
TCCACATTGGACCAGATTAACGGTTCTCTAGCAAGGAGGGCGATTAGGGAGCTGATGGCC
AAAGGTGTGATCAGGATGGTCGCTGCTCACTCTAGCCAGCAGATCTACACTCGTGCCACC
AACACTTAAAAAAAATATGTTTTGTTCGTGATTGAGCTTTGGCCTTCGATTTGTTTTTGG
TTACATTGTTTGATTACTTCTTCAGGAACTCAATAGAATACTGGTTTTGGTTCCGTTTAA
GATTGCATTGAGATTACTAAATTTGATTCAACCAGTGGCTTCATTTGTTAATCCGTCTTG
TCGTTTACGTATCATTTTCTAGAATGCGATGATCAACGGATTTGATTTGCGTCAATCGAT
TTAAGCCATGAATTTCATCTGGAAATACTAGCAACCGGACCAACCTATTCCTTTTGCGAC
GGCGATCATCGAGCCATAGAAACTCGTGGTGTCTGAATGAAACATAACCGTCCATCGCTG
TGAAATGTCAACCACGAAGCAAACAAGACAGAATTTATTCATTTAAATGGGCATTTAGGC
CCAAATTTCTCTAAGAGGCTCATTATTCAATATGCAATAAAGGTGTAAATAAGGATCCGT
TGTCTTTTTGCAACCATCATATTTCCCGCCATGACTGAGTCTTCATTAAAACATTATTTG
TACTCTCAGAAATGGCTGAGTTCCAGTTCCAGGTAGATTTTTCATCGTATGTGACCGAGA
CTTTCTTCTTTATTTTCAGCAATAGTTAAAAGACAATGATTCATCATGAAGTTGGACTTT
TCATTACAAAATAAACCTAACACAACTTGAATGATTAAAGATTTGAGGTATCTGAGAGAT
TTGGTAGCGTCTAAGCTTTTGGGGGAAAGTAAACAACAATTTGCCAATTGAGATGGATGG
CTGAGAGAAGAACCGATCAGTGTATCTTCTTTATTCACTGCAGCCTCATATTTCTCATCC
TACATATTATGTAAACACAATAGTGCGAGTAGTTAGAGACGTTGATTATAAAATCTCTAC
AGACGTATCTTGAACTAACATTATCACAACTTTGGTAGCTTGTTTTGCTATATAAACGTC
TACTGTAGTTAAATAGATACCTCTTTTCTTCCTGAAACAGCCTGCCATTGGTGTTGTAGT
TTGGGAACGGGACAAGACCGTTCTCAATGCTGTTGATATCTTGCACAAGGAGTTCATAGT
GTCTCTTTACCTCTTCCGTTGTTTTTCCACCAACAACTTGGGCAACATTGTGCCATCGGT
TAGGAGTATCCTGGTCATAGGTTGCTAGAGCCTGCTCAAAGGCTTTGTTCTGCTTAGCTG
TCCACGAACCAGAGCTGTGAGAAGACACTGAGCTTGATGCCATTGTGATAAGAGATTTTT
TTTTATGGATGGGAAGATTGCAAGTCAAGAGGATGATATGTGCACTTATGCTCCAGAAGG
CTTCCTTTTTATAAAGAAGA
Pro Sequence
MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDK
LLTEAPKFKLITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQ
IYTRATNT
mRNA Sequence
TAAGGGAGAACAAACTCTAGTTTGTTTAATACCTCAGCCTCCTCCTCCTCCTCATTTTTCAGCTTCTCCT
TCGCCGTTCGCTTCTCCGTCCAAACCAACATGGCGCCGAAGAAGGATAAGGTTCCACCGCCGTCATCTAA
GCCGGCCAAATCCGGAGGTGGAAAGCAGAAGAAGAAGAAGTGGAGCAAGGGGAAGCAAAAGGAGAAGGTG
AACAACATGGTGTTGTTTGATCAGGCTACTTACGACAAGCTTCTCACCGAAGCTCCCAAGTTCAAGCTCA
TCACTCCTTCCATTCTCTCTGACCGTATGAGGATTAACGGTTCTCTAGCAAGGAGGGCGATTAGGGAGCT
GATGGCCAAAGGTGTGATCAGGATGGTCGCTGCTCACTCTAGCCAGCAGATCTACACTCGTGCCACCAAC
ACTTAAAAAAAATATGTTTTGTTCGTGATTGAGCTTTGGCCTTCGATTTGTTTTTGGTTACATTGTTTGA
TTACTTCTTCAGGAACTCAATAGAATACTGGTTTTGGTTCCGTTTAAGATTGCATTGAGATTACTAAATT
TGATTCAACCAGTGGCTTCATTTGTTAA