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Detail for ZS11_A06G12220.t1

Genome:
ZS11: ZS11_A06G12220.t1
ZS11_v0: BnaA06T0108000ZS
WE: WE_A06G12510.t1
WE_v0: BnaA06T0106300WE
Darmor: A06p12000.1_BnaDAR
BH: BnaA06T121200BH
Quinta: BnaA06T0105400QU
ZS2: BnaA06T117900ZS2
SW: BnaA06T121300SW
Express61: A06p010830.1_BnaEXP
Xiaoyun: BnaA06G0114100XY
P202: BnaA06G009530P202.1
BL: BnaA06T121200BH
TA: BnaA06T120300TA
Da-Ae: Not available
RB: BnaA06T121300RB
No2127: BnaA06T0106800NO
P130: BnaA06G010600P130.1
Length: 459
KOG ID: -
KOG E-value: Not available
KOG Score: Not available
KOG Annotation: -
Biological Process: GO:0009773(photosynthetic electron transport in photosystem I)
Cellular Component: GO:0009507(chloroplast),GO:0010598(NAD(P)H dehydrogenase complex (plastoquinone))
Molecular Function: -
KEGG Ortholog: -
NR Protein: XP_013641684.1
NR E-value: 3.200000e-267
NR Score: 925.6
NR Annotation: XP_013641684.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Brassica napus]
SwissProt Protein: Q9S9N6|PNSB1_ARATH
SwissProt E-value: Not available
SwissProt Score: 826.0
SwissProt Annotation: Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1
CDS Sequence (1399 bp)
ATGGCTTCACTTCCTCAATCACCCAAACCCATTTCTCCCTTCTTCAAAACGCCGCCGTTTTCCACCAAAC
CACTCGTCTTCCTCAACTTCCAAACCCGGCTACCCTCCAGATCCCTCGATGTATCAGTCAACCTCAAGAA
GAAGAAGAGCGCGTGGCTCGACCCATTCGACGACGGTGAAGACCTCAATAACGAATACGGTTCACTCTTC
GCCGACGGAAAGCAAGAAGAGGACCCCAGACCACCGGATAATCCTGATAACCCATACGGGTTCTTGAAGT
TCCCAATGGGTTACACCGTCGAGCTCGCTTCTTTGCCGCTGAAAATCAGAGGAGATGTCCGACGGTGTTG
CTGCGTCGTCTCCGGCGGTGTTTACGAGAATCTACTATTTTTCCCGACGATTCAGCTACTTAAAGACAGG
TACCCTGGTGTTCAGGTAGATGTCTTAACGACAGAGAGAGGAAAACAAACTTACGAGTTAAATAAAAACG
TGAGATGGGCTAATGTGTATGATCCAGACGATCATTGGCCTGAACCTGCTGAGTATACAGACATGATCGG
ACTTCTCAAAGGAAGGTACTATGACATGATTCTATCCACAAAGCTCGCAGGGTTAGGCCACGCAGCGTTC
TTGTTCATGACAACGGCTAGAGACAGAGTTAGCTACATTTACCCAAATGTCAACTCAGCTGGAGCTGGTC
TGATGCTATCTGAAACCTTTACAGCTGAAAACACCAACCTTTCTGAATTAGGTTATAAAATGTATGACCA
GATGGAGGATTGGTTAGGAAGACCGTTCAGGAGTGTTCCAAGGACTCCTGTGCTGCCACTTAGGGTGTCG
GTTTCACGGAGATTGAAAGAGGTTGTTGCTAACAAGTACAGGGAAGCTGGAGTGGAGACAGGGAAGTTTA
TAGTGATCCATGGGATCGAATCAGATTCAAAGGCGTCGATGCAATCAAAAGGAGATAGTGATAGTTTGCT
TCCACTTACAAAATGGGCTCAGATAACAAGGGGTATAAGGGGATTCAAGCCGGTCTATGTGATTCCACAT
GAGAAAGAGAGAGAAAACGTTGAAGAATATGTGGGTGATGATACATCTATAGTGTTCATCACAACACCAG
GACAGTTGGCTGCTCTGATAAATGATTCTGCTGGAGTTATCGCTACAAACACAGCTGCTATTCAACTAGC
TAATGCTAGAGACAAACCAAGTATTGGGTTGTTCTCTTCAGAAGAGAAAGCAAATCTCTTTGTACCAGAC
GCAGAAGAGAGGAGTAACTGTGTCATTGTTGCTTCAAAGACTGGGAATCTAGCCGATATCGACGTAGGAG
CTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCATTGGCTCTCGTGTAA
Upstream Sequence
TCTTTGGCTCAAAACACCTTCAACACTCTCCCATGGCTTCACTTCCTCAATCACCCAAACCCATTTCTCC
CTTCTTCAAAACGCCGCCGTTTTCCACCAAACCACTCGTCTTCCTCAACTTCCAAACCCGGCTACCCTCC
AGATCCCTCGATGTATCAGTCAACCTCAAGAAGAAGAAGAGCGCGTGGCTCGACCCATTCGACGACGGTG
AAGACCTCAATAACGAATACGGTTCACTCTTCGCCGACGGAAAGCAAGAAGAGGACCCCAGACCACCGGA
TAATCCTGATAACCCATACGGGTTCTTGAAGTTCCCAATGGGTTACACCGTCGAGCTCGCTTCTTTGCCG
CTGAAAATCAGAGGAGATGTCCGACGGTGTTGCTGCGTCGTCTCCGGCGGTGTTTACGAGAATCTACTAT
TTTTCCCGACGATTCAGCTACTTAAAGACAGGTACCCTGGTGTTCAGGTAGATGTCTTAACGACAGAGAG
AGGAAAACAAACTTACGAGTTAAATAAAAACGTGAGATGGGCTAATGTGTATGATCCAGACGATCATTGG
CCTGAACCTGCTGAGTATACAGACATGATCGGACTTCTCAAAGGAAGGTACTATGACATGATTCTATCCA
CAAAGCTCGCAGGGTTAGGCCACGCAGCGTTCTTGTTCATGACAACGGCTAGAGACAGAGTTAGCTACAT
TTACCCAAATGTCAACTCAGCTGGAGCTGGTCTGATGCTATCTGAAACCTTTACAGCTGAAAACACCAAC
CTTTCTGAATTAGGTTATAAAATGTATGACCAGATGGAGGATTGGTTAGGAAGACCGTTCAGGAGTGTTC
CAAGGACTCCTGTGCTGCCACTTAGGGTGTCGGTTTCACGGAGATTGAAAGAGGTTGTTGCTAACAAGTA
CAGGGAAGCTGGAGTGGAGACAGGGAAGTTTATAGTGATCCATGGGATCGAATCAGATTCAAAGGCGTCG
ATGCAATCAAAAGGAGATAGTGATAGTTTGCTTCCACTTACAAAATGGGCTCAGATAACAAGGGGTATAA
GGGGATTCAAGCCGGTCTATGTGATTCCACATGAGAAAGAGAGAGAAAACGTTGAAGAATATGTGGGTGA
TGATACATCTATAGTGTTCATCACAACACCAGGACAGTTGGCTGCTCTGATAAATGATTCTGCTGGAGTT
ATCGCTACAAACACAGCTGCTATTCAACTAGCTAATGCTAGAGACAAACCAAGTATTGGGTTGTTCTCTT
CAGAAGAGAAAGCAAATCTCTTTGTACCAGACGCAGAAGAGAGGAGTAACTGTGTCATTGTTGCTTCAAA
GACTGGGAATCTAGCCGATATCGACGTAGGAGCTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCATTG
GCTCTCGTGTAA
Downstream Sequence
GTAAAAAAAGTTAAAAAAAAAAGTCTTTTTTACTGAAAATGCAGAACATTGTCTGAACGT
TTTTCATGTTGTTTGTAAGGTACCCTGGTGTTCAGGTAGATGTCTTAACGACAGAGAGAG
GAAAACAAACTTACGAGTTAAATAAAAACGTGAGATGGGCTAATGTGTATGATCCAGACG
ATCATTGGCCTGAACCTGCTGAGTATACAGACATGATCGGACTTCTCAAAGTTTGTACCT
TTTAAAAAAAAAACCTTTTTGTTGTTCTGTTTTTTAATCAGACATGTTTAAATTAACTTT
TAAATGTTACAGGGAAGGTACTATGACATGATTCTATCCACAAAGCTCGCAGGGTTAGGC
CACGCAGCGTTCTTGTTCATGACAACGGCTAGAGACAGAGTTAGCTACATTTACCCAAAT
GTCAACTCAGCTGGAGCTGGTCTGATGCTATCTGAAACCTTTACAGCTGAAAACACCAAC
CTTTCTGAATTAGGTTATAAAATGTGAGTTAGTTAGCTTCTTTCACAAGGCAATCAGAAT
GGAAAGTTTTATTGACTGTTTTATGGTTTTCAGGTATGACCAGATGGAGGATTGGTTAGG
AAGACCGTTCAGGAGTGTTCCAAGGACTCCTGTGCTGCCACTTAGGGTGTCGGTTTCACG
GAGATTGAAAGAGGTTGTTGCTAACAAGTACAGGGAAGCTGGAGTGGAGACAGGGAAGTT
TATAGTGATCCATGGGATCGAATCAGATTCAAAGGCGTCGATGCAATCAAAAGGAGATAG
TGATAGTTTGCTTCCACTTACAAAATGGGCTCAGATAACAAGGGGTATAAGGTAACTATA
CAACCTTAGAGTTGTATATGTTTTTGCTGAAATGTCGATTTTCATATTCTGAAAAAAATG
GCAGGGGATTCAAGCCGGTCTATGTGATTCCACATGAGAAAGAGAGAGAAAACGTTGAAG
AATATGTGGGTGATGATACATCTATAGTGTTCATCACAACACCAGGACAGGTATCTCTAA
GCCTTAGGCATTTGACTTGTATCTACTGAAAAAAGGTTGAGAAACTTTAATCTAACTTGA
TTCCATTTCTTGACCTTTACTTAGTTGGCTGCTCTGATAAATGATTCTGCTGGAGTTATC
GCTACAAACACAGCTGCTATTCAACTAGCTAATGCTAGAGACAAACCAAGGTGAAACTTA
TCTGATTAGGACGGACACTGATCAGTTATTTTTCAATAACTGACATGTGTGTGTTTGTTG
TTCTTCTTCTTACAGTATTGGGTTGTTCTCTTCAGAAGAGAAAGCAAATCTCTTTGTACC
AGACGCAGAAGAGAGGAGTAACTGTGTCATTGTTGCTTCAAAGACTGGGAATCTAGCCGA
TATCGACGTAGGAGCTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCATTGGCTCTCGT
GTAAATAATCTTAAAAAGTTTGTGAAACAAGTTACATAATATATATATAGCATTTTATGT
GTATAATAAATGCATTTATTCAGCATCAAAATCAGGTTCCGGAGGCTTTTGCAGATTCAA
CAACCTCTTTGAACTCTCTGTGCTCCTTAGTCTGTGACCTTTCAATGCATTAGCAGCAAA
TCTCGAAGCAAATATCGTCGAACGTAGTCTAGAAGAAGACTCGGTTCTTGTAAACACTGG
AGTCCTCTCGTCTTCCTCCTCAGCATCATCATCATCATACTCATCTTCATAACCCATCTC
GTCTTCCTCTTCTTCTATCCTTCTCAGCTCAGCGTTCTTCCTTCTCGAATGGCGACGCCA
AGCAGCTTGGATGAAGGAAGAAGCCCAAGTTCTCCATTGCTGTGAGTAAAACCTAAAAGT
CTGTTGAACCTGTCGGCTATGAAGTCTCCTAAACTGACTTGCTACAAACTTGAGCTCTTC
GGCTTCGAGAGCGAAAGCCTCTACTTCAGTCAGAGCCTTTACCGTTCTTGTGGAAGAAGG
TAGGTTTGAGCCTGCTTTGG
Pro Sequence
MASLPQSPKPISPFFKTPPFSTKPLVFLNFQTRLPSRSLDVSVNLKKKKS
AWLDPFDDGEDLNNEYGSLFADGKQEEDPRPPDNPDNPYGFLKFPMGYTV
ELASLPLKIRGDVRRCCCVVSGGVYENLLFFPTIQLLKDRYPGVQVDVLT
TERGKQTYELNKNVRWANVYDPDDHWPEPAEYTDMIGLLKGRYYDMILST
KLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSEL
GYKMYDQMEDWLGRPFRSVPRTPVLPLRVSVSRRLKEVVANKYREAGVET
GKFIVIHGIESDSKASMQSKGDSDSLLPLTKWAQITRGIRGFKPVYVIPH
EKERENVEEYVGDDTSIVFITTPGQLAALINDSAGVIATNTAAIQLANAR
DKPSIGLFSSEEKANLFVPDAEERSNCVIVASKTGNLADIDVGAVKNAMQ
VFEGSLALV
mRNA Sequence
TCTTTGGCTCAAAACACCTTCAACACTCTCCCATGGCTTCACTTCCTCAATCACCCAAACCCATTTCTCC
CTTCTTCAAAACGCCGCCGTTTTCCACCAAACCACTCGTCTTCCTCAACTTCCAAACCCGGCTACCCTCC
AGATCCCTCGATGTATCAGTCAACCTCAAGAAGAAGAAGAGCGCGTGGCTCGACCCATTCGACGACGGTG
AAGACCTCAATAACGAATACGGTTCACTCTTCGCCGACGGAAAGCAAGAAGAGGACCCCAGACCACCGGA
TAATCCTGATAACCCATACGGGTTCTTGAAGTTCCCAATGGGTTACACCGTCGAGCTCGCTTCTTTGCCG
CTGAAAATCAGAGGAGATGTCCGACGGTGTTGCTGCGTCGTCTCCGGCGGTGTTTACGAGAATCTACTAT
TTTTCCCGACGATTCAGCTACTTAAAGACAGGTACCCTGGTGTTCAGGTAGATGTCTTAACGACAGAGAG
AGGAAAACAAACTTACGAGTTAAATAAAAACGTGAGATGGGCTAATGTGTATGATCCAGACGATCATTGG
CCTGAACCTGCTGAGTATACAGACATGATCGGACTTCTCAAAGGAAGGTACTATGACATGATTCTATCCA
CAAAGCTCGCAGGGTTAGGCCACGCAGCGTTCTTGTTCATGACAACGGCTAGAGACAGAGTTAGCTACAT
TTACCCAAATGTCAACTCAGCTGGAGCTGGTCTGATGCTATCTGAAACCTTTACAGCTGAAAACACCAAC
CTTTCTGAATTAGGTTATAAAATGTATGACCAGATGGAGGATTGGTTAGGAAGACCGTTCAGGAGTGTTC
CAAGGACTCCTGTGCTGCCACTTAGGGTGTCGGTTTCACGGAGATTGAAAGAGGTTGTTGCTAACAAGTA
CAGGGAAGCTGGAGTGGAGACAGGGAAGTTTATAGTGATCCATGGGATCGAATCAGATTCAAAGGCGTCG
ATGCAATCAAAAGGAGATAGTGATAGTTTGCTTCCACTTACAAAATGGGCTCAGATAACAAGGGGTATAA
GGGGATTCAAGCCGGTCTATGTGATTCCACATGAGAAAGAGAGAGAAAACGTTGAAGAATATGTGGGTGA
TGATACATCTATAGTGTTCATCACAACACCAGGACAGTTGGCTGCTCTGATAAATGATTCTGCTGGAGTT
ATCGCTACAAACACAGCTGCTATTCAACTAGCTAATGCTAGAGACAAACCAAGTATTGGGTTGTTCTCTT
CAGAAGAGAAAGCAAATCTCTTTGTACCAGACGCAGAAGAGAGGAGTAACTGTGTCATTGTTGCTTCAAA
GACTGGGAATCTAGCCGATATCGACGTAGGAGCTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCATTG
GCTCTCGTGTAA