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Detail for ZS11_A06G40860.t1

Genome:
ZS11: ZS11_A06G40860.t1
ZS11_v0: BnaA06T0382900ZS
WE: WE_A06G44550.t1
WE_v0: BnaA06T0414800WE
Darmor: A06p41220.1_BnaDAR
BH: BnaA06T362100BH
Quinta: BnaA06T0368100QU
ZS2: BnaA06T346600ZS2
SW: BnaA06T373200SW
Express61: A06p033460.1_BnaEXP
Xiaoyun: BnaA06G0409500XY
P202: BnaA06G030180P202.1
BL: BnaA06T362100BH
TA: BnaA06T348300TA
Da-Ae: Not available
RB: BnaA06T362900RB
No2127: BnaA06T0383100NO
P130: BnaA06G034530P130.2
Length: 281
KOG ID: KOG3049
KOG E-value: Not available
KOG Score: 530.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0006099(tricarboxylic acid cycle)
Cellular Component: -
Molecular Function: GO:0051536(iron-sulfur cluster binding),GO:0009055(electron transfer activity),GO:0016491(oxidoreductase activity)
KEGG Ortholog: K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]
NR Protein: XP_022543596.1
NR E-value: 1.800000e-164
NR Score: 583.6
NR Annotation: XP_022543596.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial-like [Brassica napus]
SwissProt Protein: Q8LB02|SDHB2_ARATH
SwissProt E-value: Not available
SwissProt Score: 530.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-2 PE=1 SV=2
CDS Sequence (858 bp)
ATGTCGACCGGTTTAATCGGAAGATTAGTCAGAACCAAACCGTCGCGATTAACCACCGCAGCAAGGTTGA
TCCCATCGCGATTCACAGCCTCCGTAACCGAACCGGAATCAAAATCTCCGTCAGGCGGCGGCGGCGGAAA
AGCATCGAACTTCAAAACATTCCAGATCTACCGATGGAACCCCGACAACCCCAGCAAGCCTGAGCTCCAA
GACTACAAGATCGATCTCAAAGACTGCGGCCCCATGGTTCTCGACGCCTTGATCAAAATCAAAAACGAGA
TGGATCCCTCTCTCACCTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGA
CGGGTGCAACGGGCTCGCGTGTTTGACGAAGATCGAGGAAGGAGCCAAGGAGACGACGATCACTCCCTTG
CCTCACATGTTCGTGATCAAGGATCTGGTGGTGGACATGACTAACTTTTATAATCAGTACAAGAGTATCG
AGCCGTGGCTGAAGAGGAAGAATCCAGCTTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAAGGATAG
GGCGAAGCTTGATGGGATGTATGAGTGTATTCTCTGTGCTTGTTGTAGCACTTCTTGTCCTAGTTACTGG
TGGAACCCTGAGTCTTATCTTGGTCCTGCCGCTTTGCTACACGCCAACAGGTGGATAAGCGACAGTCGTG
ATGAGTACACTAAGGAAAGGCTTGAGGCTATTGACGATGAGTTCAAGCTTTACCGTTGTCATACGATCTT
GAACTGTGCTCGTGCGTGTCCTAAGGGTTTGAACCCGGGCAAGCAGATCGCGCACATCAAGCAACTTCAG
CGTTGA
Upstream Sequence
CAAATGTGCACACGTCGGTAATCCCGTGTGTTTATTTAAATTATGCGAAAAATATAATTAATTTTCAGAC
ATAATCAATCTTCATCGATTAGTTCGCTACGTCTCTCACTATCTCTCTCACCGCGAAAATGTCGACCGGT
TTAATCGGAAGATTAGTCAGAACCAAACCGTCGCGATTAACCACCGCAGCAAGGTTGATCCCATCGCGAT
TCACAGCCTCCGTAACCGAACCGGAATCAAAATCTCCGTCAGGCGGCGGCGGCGGAAAAGCATCGAACTT
CAAAACATTCCAGATCTACCGATGGAACCCCGACAACCCCAGCAAGCCTGAGCTCCAAGACTACAAGATC
GATCTCAAAGACTGCGGCCCCATGGTTCTCGACGCCTTGATCAAAATCAAAAACGAGATGGATCCCTCTC
TCACCTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGGGTGCAACGG
GCTCGCGTGTTTGACGAAGATCGAGGAAGGAGCCAAGGAGACGACGATCACTCCCTTGCCTCACATGTTC
GTGATCAAGGATCTGGTGGTGGACATGACTAACTTTTATAATCAGTACAAGAGTATCGAGCCGTGGCTGA
AGAGGAAGAATCCAGCTTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAAGGATAGGGCGAAGCTTGA
TGGGATGTATGAGTGTATTCTCTGTGCTTGTTGTAGCACTTCTTGTCCTAGTTACTGGTGGAACCCTGAG
TCTTATCTTGGTCCTGCCGCTTTGCTACACGCCAACAGGTGGATAAGCGACAGTCGTGATGAGTACACTA
AGGAAAGGCTTGAGGCTATTGACGATGAGTTCAAGCTTTACCGTTGTCATACGATCTTGAACTGTGCTCG
TGCGTGTCCTAAGGGTTTGAACCCGGGCAAGCAGATCGCGCACATCAAGCAACTTCAGCGTTGAAGTATT
ATTGTGCGGTCACAGTTAATGTTTGAAGCTAATAAATCTTCACGAAGTCTTTGATTTTGGATTTATTCTT
GTATTTTGTTGTTGCCGATTATTAGCACCTGTGAAAGAAACTATTTTGGCAAGTTTTCCAAAGTTGATGA
GCTTTGTGGTTGAATCTTGCTGAAAAAAATAATCTCTCTTTTAAGTAATAAAACTGAAGAACTTAAATTT
CA
Downstream Sequence
GTATGTGTGGATGATTCATAGTGTATGTCTTGTTGTTAGCTGCGTTAGATAAAGTTTTGA
TCTTTGGATGTGTTTGTAACATTGTGAAGGTGGATAAGCGACAGTCGTGATGAGTACACT
AAGGAAAGGCTTGAGGCTATTGACGATGAGTTCAAGCTTTACCGTTGTCATACGATCTTG
AACTGTGCTCGTGCGTGTCCTAAGGGTTTGAACCCGGGCAAGCAGATCGCGCACATCAAG
CAACTTCAGCGTTGAAGTATTATTGTGCGGTCACAGTTAATGTTTGAAGCTAATAAATCT
TCACGAAGTCTTTGATTTTGGATTTATTCTTGTATTTTGTTGTTGCCGATTATTAGCACC
TGTGAAAGAAACTATTTTGGCAAGTTTTCCAAAGTTGATGAGCTTTGTGGTTGAATCTTG
CTGAAAAAAATAATCTCTCTTTTAAGTAATAAAACTGAAGAACTTAAATTTCATCTACTT
ATCATCTACTTTTTTGTGTTCCATCTGCATTGTCTTTTATAAAAGCATTACATGTACTTG
TGTCGACACATGACCGCAACCGTGATAGATTAACATAGCTTATCCATAGAAAAGCTTACA
TCAGTATTTGGTGATTCAACTTACTTGGCATATATGATTGACTGCAAAAGTATAGCTGCA
AGTACTGGCACAAATGAAGATGGCACCGACAATTCTAGCTTTGTTCGTTGTCTCTTTGGT
CATTATTAGCACAGCAACTGATGTTGCTCCAGGAACCGAACAGTTTCAGTTCCTACTAAG
TTCTCAGGAACATGAGACTTCTCAGTTTTTTACTGTGGAAGGTACTATAGCTTTGAATAC
AAGTTCTGGAAACAAAGATACGTTGAGGGAACTTGAGAGAATGATCTTGTACTTGTAGTT
TAACATGAGATTTTTTGTTGTTCTTCATGTGCAGGTTGCAACAACGATTGTGAAACATCT
TGCTGTGACTGCAACATAGAGAAACAGCCTCCGGTTTGTGTCCAGTGTTGCCTGATTTGA
GCTTTGTGTGTAAAATTTATATCTATCTGTTTGTTCACATTCCTTACTCATACTTGGCTT
TAGCCCATTTCTTTATTTGGCACAGCTCGATTTAGGTATTGATGACTTGGTGCCAAGTAT
GAACTATAATATCAACCTCCTCAAATCTTTTTAAAAATTCATCACTCTGTTATTGCCTTA
TCATTTCAAGATAAATGAATTGTCACAATAATTTAACATTTGCGTGTTTTTTAATCACAA
CAACTCATTAACTTGACCCACAAACTACTCTTTTGGATCTTTACGCTAAGACCTTTTTGA
GTATATTCCTTCTTCCATTAAAGGCTCCTTGGCTTATATATCCTTCAAGGCTTATCTTCC
AATTCAAAGTGCCTTCCCTTTTTCTTTCTTTCTTTCTTTCTTTAAAATGAGACGAGAAGG
TCGGCAACATGGTATTGTCCGAACTTACCGGATTCTTCCACCGCCACCGCTTAATCCAAG
GCTGGTCAACTCTGCAACTCCATCCACATCCTCAGCAGTTTTTACCAAATTGCCATCGAA
ACCGACCAGAGCTCACAGGAGAATATGGTATGGCCAGGTGCATTGGCTGAGATCAAACGA
CATGGCTTCTTCGACCAGCTACAAACTCCTGACTTGTCGGATCATTACCAGACCCGGACC
GAGATCAGTTTTGGATCTTACCGGTTTATCTGATCTTAATGGTAATGGCGACGATTTTGA
AGAAAACAAAGGAGAAGAAGCCGAAGCAGAAACGATAAAGAGAGAGAATGGACATAATAG
CGACAAAGAAGTAGAAGATGGGTCTCGTGGCGGGTATGTTGATGGAAGCATGAGTTTTTA
CGATGTGGGGATGATGATGGAACATGTGTTAGATCACGATGACGATAAAGAAGAAGAAGA
TGGTTGGTGTTTGGTCTGAAAAAGAAGAAAGTAATGATTATGTCATGTCTCTCTCACGTG
GATCAGCTTTTTTTTTTTCT
Pro Sequence
MSTGLIGRLVRTKPSRLTTAARLIPSRFTASVTEPESKSPSGGGGGKASN
FKTFQIYRWNPDNPSKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTF
RRSCREGICGSCAMNIDGCNGLACLTKIEEGAKETTITPLPHMFVIKDLV
VDMTNFYNQYKSIEPWLKRKNPASEPGKEILQSKKDRAKLDGMYECILCA
CCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKL
YRCHTILNCARACPKGLNPGKQIAHIKQLQR
mRNA Sequence
CAAATGTGCACACGTCGGTAATCCCGTGTGTTTATTTAAATTATGCGAAAAATATAATTAATTTTCAGAC
ATAATCAATCTTCATCGATTAGTTCGCTACGTCTCTCACTATCTCTCTCACCGCGAAAATGTCGACCGGT
TTAATCGGAAGATTAGTCAGAACCAAACCGTCGCGATTAACCACCGCAGCAAGGTTGATCCCATCGCGAT
TCACAGCCTCCGTAACCGAACCGGAATCAAAATCTCCGTCAGGCGGCGGCGGCGGAAAAGCATCGAACTT
CAAAACATTCCAGATCTACCGATGGAACCCCGACAACCCCAGCAAGCCTGAGCTCCAAGACTACAAGATC
GATCTCAAAGACTGCGGCCCCATGGTTCTCGACGCCTTGATCAAAATCAAAAACGAGATGGATCCCTCTC
TCACCTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGGGTGCAACGG
GCTCGCGTGTTTGACGAAGATCGAGGAAGGAGCCAAGGAGACGACGATCACTCCCTTGCCTCACATGTTC
GTGATCAAGGATCTGGTGGTGGACATGACTAACTTTTATAATCAGTACAAGAGTATCGAGCCGTGGCTGA
AGAGGAAGAATCCAGCTTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAAGGATAGGGCGAAGCTTGA
TGGGATGTATGAGTGTATTCTCTGTGCTTGTTGTAGCACTTCTTGTCCTAGTTACTGGTGGAACCCTGAG
TCTTATCTTGGTCCTGCCGCTTTGCTACACGCCAACAGGTGGATAAGCGACAGTCGTGATGAGTACACTA
AGGAAAGGCTTGAGGCTATTGACGATGAGTTCAAGCTTTACCGTTGTCATACGATCTTGAACTGTGCTCG
TGCGTGTCCTAAGGGTTTGAACCCGGGCAAGCAGATCGCGCACATCAAGCAACTTCAGCGTTGAAGTATT
ATTGTGCGGTCACAGTTAATGTTTGAAGCTAATAAATCTTCACGAAGTCTTTGATTTTGGATTTATTCTT
GTATTTTGTTGTTGCCGATTATTAGCACCTGTGAAAGAAACTATTTTGGCAAGTTTTCCAAAGTTGATGA
GCTTTGTGGTTGAATCTTGCTGAAAAAAATAATCTCTCTTTTAAGTAATAAAACTGAAGAACTTAAATTT
CA