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Detail for ZS11_A07G17660.t1

Genome:
ZS11: ZS11_A07G17660.t1
ZS11_v0: BnaA07T0146200ZS
WE: WE_C07G27290.t1
WE_v0: BnaA07T0139900WE.1
Darmor: A07p17170.1_BnaDAR
BH: BnaC07T221400BH
Quinta: BnaA07T0105500QU
ZS2: BnaC07T190800ZS2
SW: BnaA07T149900SW
Express61: A07p013000.1_BnaEXP
Xiaoyun: BnaA07G0142900XY
P202: BnaC07G060090P202.1
BL: BnaC07T221400BH
TA: BnaA07T144900TA
Da-Ae: Not available
RB: BnaC07T225300RB
No2127: BnaA07T0141500NO.1
P130: BnaA07G017070P130.5
Length: 627
KOG ID: KOG2403
KOG E-value: Not available
KOG Score: 1217.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0022900(electron transport chain),GO:0006099(tricarboxylic acid cycle)
Cellular Component: -
Molecular Function: GO:0016627(oxidoreductase activity, acting on the CH-CH group of donors),GO:0050660(flavin adenine dinucleotide binding),GO:0016491(oxidoreductase activity)
KEGG Ortholog: K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1]
NR Protein: XP_018508778.1
NR E-value: Not available
NR Score: 1270.8
NR Annotation: XP_018508778.1 PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial isoform X1 [Brassica rapa]
SwissProt Protein: O82663|SDHA1_ARATH
SwissProt E-value: Not available
SwissProt Score: 1217.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH1-1 PE=1 SV=1
CDS Sequence (1910 bp)
ATGTGGCGCTGCGTCTCTCGTAGCCTTCGTGTTCCTTCCTCAAGGACCTCGCTCTCTGGATCTCGCTTTT
CCAGATTCCTCTCCACCGGTTCCCAGACAGGTGATTACACGATAGTGGATCACACCTATGATGCGGTGGT
TGTGGGAGCTGGTGGTGCTGGGCTTAGGGCGGCCATTGGATTATCTGAGCATGGATTTAACACCGCTTGC
ATCACCAAGCTCTTCCCCACACGGTCACATACCGTCGCTGCTCAGGGTGGTATTAATGCTGCACTGGGAA
ACATGTCTGAAGATGACTGGAGATGGCATATGTATGATACTGTCAAAGGAAGTGACTGGCTAGGTGATCA
AGATGCCATACAGTATATGTGTAGAGAGGCACCAAAAGCGGTGATTGAACTTGAGAATTATGGTCTTCCC
TTTTCTCGTACTGAAGAGGGTAAAATTTACCAGCGTGCGTTTGGTGGTCAGAGTCTTGACTTTGGCAAAG
GTGGTCAGGCCTACCGTTGTGCTTGTGCTGCGGATCGGACTGGGCATGCTCTCTTGCATACCTTATATGG
ACAAGCTATGAAGCATAACACACAGTTCTTTGTTGAATACTTCGCTCTGGATTTGCTCATGGCTAGTGAT
GGCACTTGCCAGGGAGTAATTGCACTAAACATGGAAGATGGAACATTGCATCGTTTCCGCTCTGCACAAA
CAATCTTGGCCACTGGGGGTTACGGCAGAGCATACTTCTCTGCAACCTCAGCACATACATGCACAGGAGA
TGGCAATGCCATGGTTGCACGTGCTGGTCTTCCACTCCAGGACTTGGAGTTTGTTCAGTTCCATCCAACT
GGTATTTATGGAGCCGGATGTCTCATCACTGAAGGATCCCGAGGTGAAGGTGGTATCCTTAGAAACAGTG
AAGGTGAACGTTTTATGGAACGATATGCTCCCACAGCCAAGGATCTTGCATCAAGAGATGTTGTCTCTAG
ATCTATGACTATGGAAATCAGGGAAGGTCGTGGTGTAGGACCGCATAAGGATCATATCTATCTCCATTTG
AACCATCTCCCACCAGAAGTTCTAAAAGAAAGGCTTCCTGGAATATCTGAGACCGCTGCAATCTTCGCTG
GTGTTGATGTTACCAAAGAGCCAATCCCAGTCTTGCCTACTGTGCACTATAACATGGGTGGTATCCCAAC
AAATTACCACGGCGAGGTAGTGACCATCAAAGGAGATGATCCAGATGCAGTGGTTCCAGGGCTTATGGCT
GCTGGGGAAGCAGCTTGTGCATCTGTTCACGGTGCCAACAGGCTTGGTGCAAATTCTCTCCTCGACATTG
TTGTGTTTGGCCGTGCTTGTGCGAATAGGGTAGCAGAGATAAGCAAACCAGGGGAGAAACAGAGGCCTCT
GGAGGAGAATGCAGGCAAGAAGACGATAGAATGGCTGAACAAGTTAAGACACTCAAGCGGGTCGCTTCCT
ACATCAAGTATCAGATTGAACATGCAGAGGATTATGCAGAACAATGCAGCTGTCTTCCGCACGCAAGAAA
CATTGGAAGAAGGTTGTCAGTTGATCGACAAGGCATGGGAAAGTTTCGAGGATGTCCAGGTTAAAGATCG
GAGTTTAATATGGAACTCTGATCTGATAGAGACAATAGAACTGGAGAACCTATTGATAAACGCTTCAATA
ACAATGCATTCAGCGGAAGCTCGAAAGGAAAGCAGAGGAGCACATGCTCGGGAAGATTTCACGAAAAGAG
AGGATGGAGAATGGATGAAGCATACATTGGGGTATTGGGAAGACGAGAAAGTGAGGTTGGAGTATAGGCC
TGTTCACATGGACACTCTCGACGATGAGATTGACACTTTCCCTCCCAAAGCTCGCGTCTACTGA
Upstream Sequence
AAGCACCTCACCTCGGTGGCTCTCTCTCACTCCGCTCGCGAGTTCTCAGGTAAACTTAAAAACGATTTCG
TCTACCATTTCATTTGCATCGAATCTGATCGGCTAGTGGATTCAAGAACAAGAAGAAGATGTGGCGCTGC
GTCTCTCGTAGCCTTCGTGTTCCTTCCTCAAGGACCTCGCTCTCTGGATCTCGCTTTTCCAGATTCCTCT
CCACCGGTTCCCAGACAGGTGATTACACGATAGTGGATCACACCTATGATGCGGTGGTTGTGGGAGCTGG
TGGTGCTGGGCTTAGGGCGGCCATTGGATTATCTGAGCATGGATTTAACACCGCTTGCATCACCAAGCTC
TTCCCCACACGGTCACATACCGTCGCTGCTCAGGGTGGTATTAATGCTGCACTGGGAAACATGTCTGAAG
ATGACTGGAGATGGCATATGTATGATACTGTCAAAGGAAGTGACTGGCTAGGTGATCAAGATGCCATACA
GTATATGTGTAGAGAGGCACCAAAAGCGGTGATTGAACTTGAGAATTATGGTCTTCCCTTTTCTCGTACT
GAAGAGGGTAAAATTTACCAGCGTGCGTTTGGTGGTCAGAGTCTTGACTTTGGCAAAGGTGGTCAGGCCT
ACCGTTGTGCTTGTGCTGCGGATCGGACTGGGCATGCTCTCTTGCATACCTTATATGGACAAGCTATGAA
GCATAACACACAGTTCTTTGTTGAATACTTCGCTCTGGATTTGCTCATGGCTAGTGATGGCACTTGCCAG
GGAGTAATTGCACTAAACATGGAAGATGGAACATTGCATCGTTTCCGCTCTGCACAAACAATCTTGGCCA
CTGGGGGTTACGGCAGAGCATACTTCTCTGCAACCTCAGCACATACATGCACAGGAGATGGCAATGCCAT
GGTTGCACGTGCTGGTCTTCCACTCCAGGACTTGGAGTTTGTTCAGTTCCATCCAACTGGTATTTATGGA
GCCGGATGTCTCATCACTGAAGGATCCCGAGGTGAAGGTGGTATCCTTAGAAACAGTGAAGGTGAACGTT
TTATGGAACGATATGCTCCCACAGCCAAGGATCTTGCATCAAGAGATGTTGTCTCTAGATCTATGACTAT
GGAAATCAGGGAAGGTCGTGGTGTAGGACCGCATAAGGATCATATCTATCTCCATTTGAACCATCTCCCA
CCAGAAGTTCTAAAAGAAAGGCTTCCTGGAATATCTGAGACCGCTGCAATCTTCGCTGGTGTTGATGTTA
CCAAAGAGCCAATCCCAGTCTTGCCTACTGTGCACTATAACATGGGTGGTATCCCAACAAATTACCACGG
CGAGGTAGTGACCATCAAAGGAGATGATCCAGATGCAGTGGTTCCAGGGCTTATGGCTGCTGGGGAAGCA
GCTTGTGCATCTGTTCACGGTGCCAACAGGCTTGGTGCAAATTCTCTCCTCGACATTGTTGTGTTTGGCC
GTGCTTGTGCGAATAGGGTAGCAGAGATAAGCAAACCAGGGGAGAAACAGAGGCCTCTGGAGGAGAATGC
AGGCAAGAAGACGATAGAATGGCTGAACAAGTTAAGACACTCAAGCGGGTCGCTTCCTACATCAAGTATC
AGATTGAACATGCAGAGGATTATGCAGAACAATGCAGCTGTCTTCCGCACGCAAGAAACATTGGAAGAAG
GTTGTCAGTTGATCGACAAGGCATGGGAAAGTTTCGAGGATGTCCAGGTTAAAGATCGGAGTTTAATATG
GAACTCTGATCTGATAGAGACAATAGAACTGGAGAACCTATTGATAAACGCTTCAATAACAATGCATTCA
GCGGAAGCTCGAAAGGAAAGCAGAGGAGCACATGCTCGGGAAGATTTCACGAAAAGAGAGGATGGAGAAT
GGATGAAGCATACATTGGGGTATTGGGAAGACGAGAAAGTGAGGTTGGAGTATAGGCCTGTTCACATGGA
CACTCTCGACGATGAGATTGACACTTTCCCTCCCAAAGCTCGCGTCTACTGATTTCCTTCCCCCCCCCTC
CCACAAACAAGCAAGCAGCAGCAGCGATATGCTTTGTTATTTTTATTTTGTCGACTGAATAATAATAATA
CCAGGAGGATAAGAGAAAAGGGGATTAGGAGAAATGGACACAAAAAAAAGGAGTTTTTGCTATTTATTAT
TGTGATGAGAGAAAGCTCATGTTTTGGAGGACAAAAACAGCTTTCGTCGTCTTCATCTTGTTTTTTTACA
TTTGACACCAGAAAGGGTGTGTAATAAAATGGTAAAAGACCGTTAAAGTGTAGTCTGTATTCCCTTTTAA
CCAGTTCTTGAAACACTATTTACTTCTATCttattaaaagaaaattatgtctta
Downstream Sequence
CGTAAGATCTCTCCTCCGATTGCTAGTTTTATCGTTTCGATCGTATGTAAATACACGTGG
AATCTCGAGTAACGGTTTATTCAGTAGTCAATAGTTTCGTCCGCCATCAAATCCGTTTGA
GTTTTGGTATTGAATTTGATCGGGATTGCGTATTGTTAGAATTGCTTTTTTTTTTGCTTA
TTGTGTGTATGGATGTTGATCATGCAGCAGACAGGTGATTACACGATAGTGGATCACACC
TATGATGCGGTGGTTGTGGGAGCTGGTGGTGCTGGGCTTAGGGCGGCCATTGGATTATCT
GAGCATGGATTTAACACCGCTTGCATCACCAAGCTCTTCCCCACACGGTCACATACCGTC
GCTGCTCAGGTTAATTTCGTTTTACCATTCTGATTAGTAATGGAGTTTTGGTTTCTTTGA
GATTTGATGAGCTTTAATGTGATGTGGGGGATCTGTGAAGGGTGGTATTAATGCTGCACT
GGGAAACATGTCTGAAGATGACTGGAGATGGCATATGTATGATACTGTCAAAGGAAGTGA
CTGGCTAGGTAATCTTCGTCCTCTTTGCATTGCAACTCCTCTTTTCTTTTGTATTAGTTA
ATTGCTCATGCTAGTATTTGTGCGTGCATTGAACAGTTATTGATTTTCTTTGTGTAGGTG
ATCAAGATGCCATACAGTATATGTGTAGAGAGGCACCAAAAGCGGTGATTGAACTTGAGA
ATTATGGTCTTCCCTTTTCTCGTACTGAAGAGGGTAAAATTTACCAGCGTGCGTTTGGTG
GTCAGAGTCTTGACTTTGGCAAAGGTGACTTTGTCTAACGTCTTGCTACCTTTTTGATCA
TTTTATTTGATTTATACATCTATGCTCTTGCTGACTTTGTTTCGGGTGCTTTGACATTTT
TCTTTTAGTAGATTTTCTCATGTTGGCTTTCTTTTTATTCTACCTGCAGGTGGTCAGGCC
TACCGTTGTGCTTGTGCTGCGGATCGGACTGGGCATGCTCTCTTGCATACCTTATATGGA
CAAGCTATGAAGCATAACACACAGTTCTTTGTTGAATACTTCGCTCTGGATTTGCTCATG
GCTAGTGATGGTATGTGTTTGGGATATCTTTTCCTTTTACTTGTAGCTTCCGTTAGTATT
TATGCAACATTGTTATCCGATCTGCAGGCACTTGCCAGGGAGTAATTGCACTAAACATGG
AAGATGGAACATTGCATCGTTTCCGCTCTGCACAAACAATCTTGGCCACTGGGGTGAGCT
AGTTTTTAGTAGTTTTCATGTTACGAATTTTTCCAGTTGTGCAACTTTACTCACACTGTG
CCTCATTTTTTTCCAGGGTTACGGCAGAGCATACTTCTCTGCAACCTCAGCACATACATG
CACAGGAGATGGCAATGCCATGGTTGCACGTGCTGGTCTTCCACTCCAGGTATGCTGCCT
ATTTCGTTTTGAGATAAATGGTGTATAACGTATCTGTATACTAATAATATTGTTGTCTGA
TTACGTCATATGCAGGACTTGGAGTTTGTTCAGTTCCATCCAACTGGTATTTATGGAGCC
GGATGTCTCATCACTGAAGGTTAGCATCTTGTCCTCACATACTCCATTTACTTAGAAGAT
AGAGATTTAAAGTGGTTTGTCACATGTTCATTTTTGGTGTTTGTCTACTGTACTATTGCA
GGATCCCGAGGTGAAGGTGGTATCCTTAGAAACAGTGAAGGTGAACGTTTTATGGAACGA
TATGCTCCCACAGCCAAGGATCTTGCATCAAGAGATGTTGTCTCTAGATCTATGACTATG
GAAATCAGGGAAGGTCGTGGTGTAGGTATGCTATATTCAACTTTCGCAGCTAACTCTCAT
TATGAGTCTTTGAGGACCATGATTGATTTCGTGATCCTGTGTAGTCTAAATACTAGTTTT
GGATTAACCGTTGCTAAAATGGACAGGACCGCATAAGGATCATATCTATCTCCATTTGAA
CCATCTCCCACCAGAAGTTC
Pro Sequence
MWRCVSRSLRVPSSRTSLSGSRFSRFLSTGSQTGDYTIVDHTYDAVVVGA
GGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMSEDDW
RWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIY
QRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQFFVEY
FALDLLMASDGTCQGVIALNMEDGTLHRFRSAQTILATGGYGRAYFSATS
AHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGSRGEGGIL
RNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPHKDHIYLHL
NHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNYH
GEVVTIKGDDPDAVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRAC
ANRVAEISKPGEKQRPLEENAGKKTIEWLNKLRHSSGSLPTSSIRLNMQR
IMQNNAAVFRTQETLEEGCQLIDKAWESFEDVQVKDRSLIWNSDLIETIE
LENLLINASITMHSAEARKESRGAHAREDFTKREDGEWMKHTLGYWEDEK
VRLEYRPVHMDTLDDEIDTFPPKARVY
mRNA Sequence
AAGCACCTCACCTCGGTGGCTCTCTCTCACTCCGCTCGCGAGTTCTCAGGTAAACTTAAAAACGATTTCG
TCTACCATTTCATTTGCATCGAATCTGATCGGCTAGTGGATTCAAGAACAAGAAGAAGATGTGGCGCTGC
GTCTCTCGTAGCCTTCGTGTTCCTTCCTCAAGGACCTCGCTCTCTGGATCTCGCTTTTCCAGATTCCTCT
CCACCGGTTCCCAGACAGGTGATTACACGATAGTGGATCACACCTATGATGCGGTGGTTGTGGGAGCTGG
TGGTGCTGGGCTTAGGGCGGCCATTGGATTATCTGAGCATGGATTTAACACCGCTTGCATCACCAAGCTC
TTCCCCACACGGTCACATACCGTCGCTGCTCAGGGTGGTATTAATGCTGCACTGGGAAACATGTCTGAAG
ATGACTGGAGATGGCATATGTATGATACTGTCAAAGGAAGTGACTGGCTAGGTGATCAAGATGCCATACA
GTATATGTGTAGAGAGGCACCAAAAGCGGTGATTGAACTTGAGAATTATGGTCTTCCCTTTTCTCGTACT
GAAGAGGGTAAAATTTACCAGCGTGCGTTTGGTGGTCAGAGTCTTGACTTTGGCAAAGGTGGTCAGGCCT
ACCGTTGTGCTTGTGCTGCGGATCGGACTGGGCATGCTCTCTTGCATACCTTATATGGACAAGCTATGAA
GCATAACACACAGTTCTTTGTTGAATACTTCGCTCTGGATTTGCTCATGGCTAGTGATGGCACTTGCCAG
GGAGTAATTGCACTAAACATGGAAGATGGAACATTGCATCGTTTCCGCTCTGCACAAACAATCTTGGCCA
CTGGGGGTTACGGCAGAGCATACTTCTCTGCAACCTCAGCACATACATGCACAGGAGATGGCAATGCCAT
GGTTGCACGTGCTGGTCTTCCACTCCAGGACTTGGAGTTTGTTCAGTTCCATCCAACTGGTATTTATGGA
GCCGGATGTCTCATCACTGAAGGATCCCGAGGTGAAGGTGGTATCCTTAGAAACAGTGAAGGTGAACGTT
TTATGGAACGATATGCTCCCACAGCCAAGGATCTTGCATCAAGAGATGTTGTCTCTAGATCTATGACTAT
GGAAATCAGGGAAGGTCGTGGTGTAGGACCGCATAAGGATCATATCTATCTCCATTTGAACCATCTCCCA
CCAGAAGTTCTAAAAGAAAGGCTTCCTGGAATATCTGAGACCGCTGCAATCTTCGCTGGTGTTGATGTTA
CCAAAGAGCCAATCCCAGTCTTGCCTACTGTGCACTATAACATGGGTGGTATCCCAACAAATTACCACGG
CGAGGTAGTGACCATCAAAGGAGATGATCCAGATGCAGTGGTTCCAGGGCTTATGGCTGCTGGGGAAGCA
GCTTGTGCATCTGTTCACGGTGCCAACAGGCTTGGTGCAAATTCTCTCCTCGACATTGTTGTGTTTGGCC
GTGCTTGTGCGAATAGGGTAGCAGAGATAAGCAAACCAGGGGAGAAACAGAGGCCTCTGGAGGAGAATGC
AGGCAAGAAGACGATAGAATGGCTGAACAAGTTAAGACACTCAAGCGGGTCGCTTCCTACATCAAGTATC
AGATTGAACATGCAGAGGATTATGCAGAACAATGCAGCTGTCTTCCGCACGCAAGAAACATTGGAAGAAG
GTTGTCAGTTGATCGACAAGGCATGGGAAAGTTTCGAGGATGTCCAGGTTAAAGATCGGAGTTTAATATG
GAACTCTGATCTGATAGAGACAATAGAACTGGAGAACCTATTGATAAACGCTTCAATAACAATGCATTCA
GCGGAAGCTCGAAAGGAAAGCAGAGGAGCACATGCTCGGGAAGATTTCACGAAAAGAGAGGATGGAGAAT
GGATGAAGCATACATTGGGGTATTGGGAAGACGAGAAAGTGAGGTTGGAGTATAGGCCTGTTCACATGGA
CACTCTCGACGATGAGATTGACACTTTCCCTCCCAAAGCTCGCGTCTACTGATTTCCTTCCCCCCCCCTC
CCACAAACAAGCAAGCAGCAGCAGCGATATGCTTTGTTATTTTTATTTTGTCGACTGAATAATAATAATA
CCAGGAGGATAAGAGAAAAGGGGATTAGGAGAAATGGACACAAAAAAAAGGAGTTTTTGCTATTTATTAT
TGTGATGAGAGAAAGCTCATGTTTTGGAGGACAAAAACAGCTTTCGTCGTCTTCATCTTGTTTTTTTACA
TTTGACACCAGAAAGGGTGTGTAATAAAATGGTAAAAGACCGTTAAAGTGTAGTCTGTATTCCCTTTTAA
CCAGTTCTTGAAACACTATTTACTTCTATCttattaaaagaaaattatgtctta