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Detail for ZS11_A07G20740.t1

Genome:
ZS11: ZS11_A07G20740.t1
ZS11_v0: BnaA07T0174400ZS
WE: WE_A07G21420.t1
WE_v0: BnaA07T0167300WE
Darmor: A07p20420.1_BnaDAR
BH: BnaA09T029500BH
Quinta: BnaA07T0133100QU
ZS2: BnaA07T173100ZS2
SW: BnaA07T183200SW
Express61: A07p015700.1_BnaEXP
Xiaoyun: BnaA07G0170600XY
P202: BnaC02G036540P202.1
BL: BnaA09T029500BH
TA: BnaA07T173700TA
Da-Ae: Not available
RB: BnaA07T184000RB
No2127: BnaA07T0169700NO
P130: BnaC02G059120P130.1
Length: 267
KOG ID: KOG3049
KOG E-value: Not available
KOG Score: 504.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0006099(tricarboxylic acid cycle)
Cellular Component: -
Molecular Function: GO:0016491(oxidoreductase activity),GO:0009055(electron transfer activity),GO:0051536(iron-sulfur cluster binding)
KEGG Ortholog: K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]
NR Protein: XP_013651858.1
NR E-value: 2.700000e-157
NR Score: 559.7
NR Annotation: XP_013651858.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Brassica napus]
SwissProt Protein: Q8LB02|SDHB2_ARATH
SwissProt E-value: Not available
SwissProt Score: 504.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-2 PE=1 SV=2
CDS Sequence (815 bp)
ATGGCGTCTGGTTTGGTCGGAAGAGTTGTTGGAACGAACCCGTCGAGGGCAGCACGATTGATTCCGTCGC
GTTGGACATCATCAAAAGCTGTCGTAGGAGCGAAACTGAAGACGTTCCAGATCTACAGATGGAATCCAGA
TTCTCCCGGGAAGCCTGAGCTCCAAGACTACCAGCTCGATCTCAAAGACTGTGGCCCCATGGTTCTAGAC
GCGCTCATCAAGATCACAAACGAGATGGATCCGTCGCTCACTTTCCGCCGATCGTGCCGAGAAGGCATCT
GCGGTTCCTGCGCGATGAACATCGACGGATGCAACGGTCTCGCTTGTTTGACGAAGATCGAGTCGGAGTC
TTCGAAAGAGACGACGATCACGCCTCTGCCGCATATGTTTGTGATAAAGGATCTGGTGGTGGACATGACG
AATTTTTATAATCAGTACAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTGTTCCTGGGA
AGGAGATTCTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAGTGCATTCTCTGCGCTTG
TTGCAGCACTTCTTGTCCTAGCTATTGGTGGAACCCTGAGTCTTATCTTGGCCCCGCCGCTTTGCTCCAT
GCCAACAGGTGGATAAgcgacagtcgagaTGAGTATACTAAAGAAAGACTTGAAGCCACTACCGACGAGT
TCAAGCTCTATCGGTGCCACACTATCTTGAACTGTGCTCGTGCCTGTCCAAAGGGATTAAACCCAGGGAA
ACAGATCTCACACATCAAGCAACTTCAGAAATAA
Upstream Sequence
ATGGCGTCTGGTTTGGTCGGAAGAGTTGTTGGAACGAACCCGTCGAGGGCAGCACGATTGATTCCGTCGC
GTTGGACATCATCAAAAGCTGTCGTAGGAGCGAAACTGAAGACGTTCCAGATCTACAGATGGAATCCAGA
TTCTCCCGGGAAGCCTGAGCTCCAAGACTACCAGCTCGATCTCAAAGACTGTGGCCCCATGGTTCTAGAC
GCGCTCATCAAGATCACAAACGAGATGGATCCGTCGCTCACTTTCCGCCGATCGTGCCGAGAAGGCATCT
GCGGTTCCTGCGCGATGAACATCGACGGATGCAACGGTCTCGCTTGTTTGACGAAGATCGAGTCGGAGTC
TTCGAAAGAGACGACGATCACGCCTCTGCCGCATATGTTTGTGATAAAGGATCTGGTGGTGGACATGACG
AATTTTTATAATCAGTACAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTGTTCCTGGGA
AGGAGATTCTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAGTGCATTCTCTGCGCTTG
TTGCAGCACTTCTTGTCCTAGCTATTGGTGGAACCCTGAGTCTTATCTTGGCCCCGCCGCTTTGCTCCAT
GCCAACAGGTGGATAAgcgacagtcgagaTGAGTATACTAAAGAAAGACTTGAAGCCACTACCGACGAGT
TCAAGCTCTATCGGTGCCACACTATCTTGAACTGTGCTCGTGCCTGTCCAAAGGGATTAAACCCAGGGAA
ACAGATCTCACACATCAAGCAACTTCAGAAATAA
Downstream Sequence
GTTCACTAACTCTTGCTTCTTTCTTTTTTTTTATAGTGGAGCTTGTTTGGTTTAAGCAAA
TAAGATTTGATAAAAAGATTGAGATTCTGCTTAAGATTTGGGTGATTGATTATGTATGGC
TAGCTGGGTTGTTTTTTCTCCTTTAGTTTGACTAAAGGAAGGTGCTAAGGACCACTCTAC
ACCTTCCAAGGTACTGTAACAAGACATTTCTTTTTAACATATGCAGGTGGATAAgcgaca
gtcgagaTGAGTATACTAAAGAAAGACTTGAAGCCACTACCGACGAGTTCAAGCTCTATC
GGTGCCACACTATCTTGAACTGTGCTCGTGCCTGTCCAAAGGGATTAAACCCAGGGAAAC
AGATCTCACACATCAAGCAACTTCAGAAATAAGAATAACACAACAATTCAAATCGTGCAG
TACTCATTGGAATCTCATTTATCAATggggtttttttttttggagataataaatctgcaa
gaaacgctgatttcggaataattcttgtattgcttttgcaaacttacaaatatcagaaca
gatgagtttgctttgcctttagagcacctccaatggtgttacccaccattggagtcctta
acattagtttattaattttttttttttttttttttttatgaatagtcaaggactcttatc
ataaatattactccaatggtgttaccattaaggaatccttacaaaattattaataaatat
tttttaaaagaaaatttaaaatttttatttatTGAATGAGAAAATAGAAACATACAACAA
TTAAACATTTGCATCATTACCAAACTTGTTCCAAATATTTTGGATCAAATCAAATTTCAA
TTGTTCATGCGTATGTGGGTCACGAACTTGAGTACGTATTTCAAGCATAGTTCGGAGATT
TGAAGGCCTGCGAGTATATGACATATCCACCTCTGAACTTCTACTCGACTCTCCTTCTTC
AAACTCTGATATATCACACCCGCTGTATCCATTGCGTTCATTTTCCACTATCATATTGTG
GAGTATGATACATGTTCGCATAACCATCCCTATTTGGGTCTTGTCCCACAAAATAGCCGG
GTTTTTAACTATTGCAAATCGAGCTTGCAATACTCCGAAAGCACGCTCCACATCTTTTCG
GGTGGACTCCTGAACTTTAGCAAATAACTGTGCTTCAGGGCTTTGAGGGTTTGAGATAGA
TTGGATAAATGTTGACCATCTTGGATATATGCCGTCTGTGAGGTAGTAAGGCAAACCATA
TTGGTGTCCGTTTACGAGGTATTGTACCCTTGGAGCTCGACCTTGTAAAATGTCATCAAA
AACAGGAGATCGATCGAGGACGTTAATATCGTTTAAGGTACCTGGAGGACCAAAAAAAGC
GTGCCAAATCCAAAGATCTTGGGAAGCTACAGCTTCCAAGACAATGGTTGGCTTTCCTGA
TCCACGTGTGTACTGTCCTTTCCAAGCGGTTGGGCAATTTTTCCACTCCCAATGCATACA
ATCGATGCTTCCTATCATTCCCGGAAAGCCGCGAATCTCTCCAATATCGAGCAATCGTTG
AAGATCCTCTGGAGTGGGTCTTCGCATATACTCTTCTCCAAATAAATCAATTACCCCTTC
TGTGAAATTCGTTAAACATGAAAGTGCCGTGCTTTCACCAAGTCTGAGGTATTCGTCAAC
GGCGTCAGCCGCACAGCCATAAGCAAGCATACGAAGAGCTGCCGTACACTTTTGTAGTGG
AGATAGACCTAATCTTCCGACAGCATCTCTTCTTTGTTGGAAGAAAGGATAATTTTCTGA
TAGACGATCGACAATACGCATGAAAACTTCCTTGTTCATGCGGAAACGGCGTCTGAATAA
ATGAGGCGGAAATGTTGGATTTTCACTGAAGTAGTCATTCCATAGACGGGAATGGCCCTC
TTCGCGGTTTCTTTCGACATATGCACGTTTTCTCTCTTTCTTTTTTTGCTTCTTTACGAT
GTCGTTGTATGTATCTTCCA
Pro Sequence
MASGLVGRVVGTNPSRAARLIPSRWTSSKAVVGAKLKTFQIYRWNPDSPG
KPELQDYQLDLKDCGPMVLDALIKITNEMDPSLTFRRSCREGICGSCAMN
IDGCNGLACLTKIESESSKETTITPLPHMFVIKDLVVDMTNFYNQYKSIE
PWLKRKTPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNPE
SYLGPAALLHANRWISDSRDEYTKERLEATTDEFKLYRCHTILNCARACP
KGLNPGKQISHIKQLQK
mRNA Sequence
ATGGCGTCTGGTTTGGTCGGAAGAGTTGTTGGAACGAACCCGTCGAGGGCAGCACGATTGATTCCGTCGC
GTTGGACATCATCAAAAGCTGTCGTAGGAGCGAAACTGAAGACGTTCCAGATCTACAGATGGAATCCAGA
TTCTCCCGGGAAGCCTGAGCTCCAAGACTACCAGCTCGATCTCAAAGACTGTGGCCCCATGGTTCTAGAC
GCGCTCATCAAGATCACAAACGAGATGGATCCGTCGCTCACTTTCCGCCGATCGTGCCGAGAAGGCATCT
GCGGTTCCTGCGCGATGAACATCGACGGATGCAACGGTCTCGCTTGTTTGACGAAGATCGAGTCGGAGTC
TTCGAAAGAGACGACGATCACGCCTCTGCCGCATATGTTTGTGATAAAGGATCTGGTGGTGGACATGACG
AATTTTTATAATCAGTACAAGAGTATTGAGCCGTGGTTGAAGAGGAAGACTCCAGCGTCTGTTCCTGGGA
AGGAGATTCTGCAGAGTAAGAAGGATAGAGCTAAGCTTGATGGGATGTATGAGTGCATTCTCTGCGCTTG
TTGCAGCACTTCTTGTCCTAGCTATTGGTGGAACCCTGAGTCTTATCTTGGCCCCGCCGCTTTGCTCCAT
GCCAACAGGTGGATAAgcgacagtcgagaTGAGTATACTAAAGAAAGACTTGAAGCCACTACCGACGAGT
TCAAGCTCTATCGGTGCCACACTATCTTGAACTGTGCTCGTGCCTGTCCAAAGGGATTAAACCCAGGGAA
ACAGATCTCACACATCAAGCAACTTCAGAAATAA