SEARCH

DETAIL

Detail for ZS11_A08G25350.t1

Genome:
ZS11: ZS11_A08G25350.t1
ZS11_v0: BnaC09T0318900ZS
WE: WE_C07G36310.t1
WE_v0: BnaC09T0311200WE
Darmor: A08p24980.1_BnaDAR
BH: BnaC01T364200BH
Quinta: BnaC09T0303500QU
ZS2: Bnascaffold0184T000700ZS2
SW: BnaA06T230700SW
Express61: C09p041940.1_BnaEXP
Xiaoyun: BnaC01G0351400XY
P202: BnaC09G076880P202.1
BL: BnaC01T364200BH
TA: BnaC01T345100TA
Da-Ae: Not available
RB: Bnascaffold0536T000100RB
No2127: BnaC09T0266400NO
P130: BnaC09G042100P130.1
Length: 89
KOG ID: KOG2870
KOG E-value: 7.000000e-43
KOG Score: 144.0
KOG Annotation: Energy production and conversion
Biological Process: -
Cellular Component: -
Molecular Function: GO:0016651(oxidoreductase activity, acting on NAD(P)H),GO:0048038(quinone binding),GO:0051287(NAD binding)
KEGG Ortholog: -
NR Protein: VDD06245.1
NR E-value: 3.000000e-44
NR Score: 182.6
NR Annotation: VDD06245.1 unnamed protein product [Brassica rapa]
SwissProt Protein: A4QLG5|NDHH_LEPVR
SwissProt E-value: 1.210000e-42
SwissProt Score: 145.0
SwissProt Annotation: NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Lepidium virginicum OX=59292 GN=ndhH PE=3 SV=1
CDS Sequence (273 bp)
ATGGGTTTATCCGGACCAATGTTACGTGCATCCGGAATACCATGGGATCTTCGTAAAGTTGATCGTTATG
AGTCTTACGATGAATTTGAATGGGAAATTCAGTGGCAAAAACAAAGAGATTCATTAGCTCGTTATTTAGT
ACGACTTAGCGAAATGACAGAATCCATCAAAATTATTCAACAGGTTTTGGAAAGACTTCCGGGGGGTCCC
TATGAAAATTTAGATTATATTGTTATTTCCAGCAAAAGACTACTAAATAGAATCAAATAA
Upstream Sequence
ATGGGTTTATCCGGACCAATGTTACGTGCATCCGGAATACCATGGGATCTTCGTAAAGTTGATCGTTATG
AGTCTTACGATGAATTTGAATGGGAAATTCAGTGGCAAAAACAAAGAGATTCATTAGCTCGTTATTTAGT
ACGACTTAGCGAAATGACAGAATCCATCAAAATTATTCAACAGGTTTTGGAAAGACTTCCGGGGGGTCCC
TATGAAAATTTAGATTATATTGTTATTTCCAGCAAAAGACTACTAAATAGAATCAAATAA
Downstream Sequence
AAGAATATGATCGTATTATCAACAAAACGAGTATCCAATGACTATGAGCTAAATTAAAAT
CCTACGGAAAAGATTTTGTCAAGTGAAATAATCAGGGAAAAATAAAGAAGGATTCAATCC
AATAAGAGTTCTCGATCTACATTTATACACATACATTACTTAcagataagataaaattct
atttcgaagtcataaaatgattttaaaataataatttataaagaaatgtcaaacacatat
acaaacagtgtatAGATATAGAAAGTAAAGCGGGGTCCGCACTCAATGCCATTATGATGA
CATCATCAGATAAGACACAAAGAGAAGACTTGAGTACTCTCTACGTTTCCTCTCTTCTTC
CTCTATATAAACCCTTTTCTTCTCGTCTCCTCTTCTTACTGTTCTCTAATCTAAATCTAA
TTTCACCTTTCCTACAAAACCTAAAACATTTTTCTTATTACACAACCTAAAAGTCCCTAA
GTTTCTGATAATGTCGGAAGAGTTCGACGAATCTGAGATCATTTTCTCCGACAGCTTCTT
CCCAATTCGCCGGCGTGAGGACGTGATCGAGAAAGAGAACCGTCCGGTTAATTTCCGAGA
AAACTCCGAAACCAAAATGAGAAACACATCGAGGCTGAGTAAAACGACGCCGTTGCCTTC
TTCACCAGCGGCTTTCTCATCATCGTCGCTTCCGGTGAATATTCCGGGAAGGAAGTATTC
TTCTGAGGATGAGGAATATTCGGAAGACGGAGGAAGGAGAATGGTTCCGCCGCATCTGAT
CGTTGGACGGAGGATCGAAAGCGGTCAAATGGCGTTTTCGGTTTGTACAGGTCAGGGAAG
GACTCTTAAAGGCCGAGATCTGAGCCGGGTTCGTAATTCGGTTCTCAGGTTAACCGGTTT
TTTGGAGGCTTGAATACGGACCGGTTTTTGATTTATTAAAAGATTCGTCTTCCAATTTTT
TTTTTTTAGCGGAAGAAATTCAGTTGTCTGATATTGTTGTTAGTTTAGTCACTTGAACGA
ATGTCTAAAGGAAAATGTCAAAAAGAACATTTATTTCTCTGTTTATTTATTTGAATTGTT
AGTTTTGATTTCTCTCAAATGTAACCGGAAAATAATTGAAGTTACTTTTTTTTTATCAAT
TTCGGATTACTTATGATTATAATGTTGCAAAAATATTTGAAACCATTGTTCATCAACAGT
TGATTTTAGTCATTTAAAAGAATCGATAAAACTGGAAGAATACAAAAAAAATTAGCATGA
TCCATATGTAAAATGACATGCACAAATAAAGTAATCTAAATTCTTTTTATTGAAAACAAA
GAAAGATTTTACGCTGATGAAATTGATTTGTTGTGTAAATATAATAAATTAAATTTACGA
ATGTATTATGAAGATCTATGCAAAATCGGAATATTTCCACCAATGAAAGTGAGGACAAAA
GACGAACAGAACCAGCTGTTTGGTTCTGAATGATTGTGAGCGAGAGATGTCACATTTCTT
GCCGGTGACATCAACGCGAGACATATGCATATGTTATGCATCATATTTCCTAAACGTAAA
TACTTAATGCATTACTATTTTTTCAACTCTATTACAAATTTATAATATATTTGTGAAAGA
AAATAAACGACCAACTAAAATTCAAAAAACACGTGTTAAGAGCAACGTGGTCAAAGATTA
ACCAAAAAATGTCATGGTCAAATAAATTACCTAGTTCTATCTTCTGTTCTTTTAACCCAG
TTAAAAAAGTGGAATGGAAATCAATTAGTCAAACCTATCATATCTATTTAAAAAGCATAT
GGGATATTTATAATTAAAATCCGGCGTAGTCAAACTCTTAGCAGCCATCCCTTTGGAATA
TGAGCGTCTCATGGATATACTTTAACATGATTATAAGCCGACGGCACATGCATCTAACAA
TGTTCTTATCCATTAACTTTTTACTAACTGGATTGTTTAATGTACAGACAATACTAGTAC
TTTTAACAGTCAAACTTGTT
Pro Sequence
MGLSGPMLRASGIPWDLRKVDRYESYDEFEWEIQWQKQRDSLARYLVRLS
EMTESIKIIQQVLERLPGGPYENLDYIVISSKRLLNRIK
mRNA Sequence
ATGGGTTTATCCGGACCAATGTTACGTGCATCCGGAATACCATGGGATCTTCGTAAAGTTGATCGTTATG
AGTCTTACGATGAATTTGAATGGGAAATTCAGTGGCAAAAACAAAGAGATTCATTAGCTCGTTATTTAGT
ACGACTTAGCGAAATGACAGAATCCATCAAAATTATTCAACAGGTTTTGGAAAGACTTCCGGGGGGTCCC
TATGAAAATTTAGATTATATTGTTATTTCCAGCAAAAGACTACTAAATAGAATCAAATAA