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Detail for ZS11_A09G16460.t1

Genome:
ZS11: ZS11_A09G16460.t1
ZS11_v0: BnaA09T0154100ZS
WE: WE_A09G16610.t1
WE_v0: BnaA09T0143600WE
Darmor: A09p16050.1_BnaDAR
BH: BnaC09T016300BH
Quinta: BnaA09T0146400QU
ZS2: BnaA09T154400ZS2
SW: BnaC09T148900SW
Express61: A09p013610.1_BnaEXP
Xiaoyun: BnaA09G0150800XY
P202: BnaA09G015410P202.2
BL: BnaC09T016300BH
TA: BnaA09T147800TA
Da-Ae: Not available
RB: BnaA09T156900RB
No2127: BnaA09T0089800NO
P130: BnaA09G014120P130.2
Length: 305
KOG ID: KOG4411
KOG E-value: Not available
KOG Score: 565.0
KOG Annotation: Lipid transport and metabolism
Biological Process: GO:0009058(biosynthetic process)
Cellular Component: -
Molecular Function: -
KEGG Ortholog: K18163 NDUFAF6; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
NR Protein: XP_009113055.1
NR E-value: 9.400000e-175
NR Score: 617.8
NR Annotation: XP_009113055.1 PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Brassica rapa]
SwissProt Protein: D3ZN43|NDUF6_RAT
SwissProt E-value: 8.450000e-61
SwissProt Score: 199.0
SwissProt Annotation: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Rattus norvegicus OX=10116 GN=Ndufaf6 PE=3 SV=1
CDS Sequence (931 bp)
ATGAACGGACCACGAGGCTCGAGTAGTTTGCGTTCAGCATTCTCTTACTGTGTACAACAAGTGCGTAACT
ATGACTACCACCACTACCTCTGTCTCCTTGAACTCCCACCTCAGATGCGTAAAGCCGCCTTTGCACTCCG
CGCTTTCAACGTAGAAACCGCAAGAGCCATGGATGTTGCATCTGATCCCAAAATCGGCTTGATGCGTTTA
CTCTGGTGGCAAGAAGCAATCGACAAACTCTACACGAAAAAAACCGTAAACCATCCAGCTGCACAAGCTC
TCTCCTGGGCGATATCAGAGCATAGCATCAGTAAACCGTGGCTTAAACGCTCGGTTGAAGCAAGAATCCA
AGATGCTCAGAGAGAAGCTGATGATATACCAGAGAGTGTTGAGGAGCTTGAGAAGTACGCTGAAGATACG
GTTTCGACCCTTCTGTATAATACACTCCAAGCTGGCGGGATTAGTTCAACAGCAGCGGACCACGCAGCTT
CACACATCGGTAAAGCCAGTGGTCTTGTCTTGCTGCTGAAGTCGTTGCCTTACCATTGTACTAGAAACCG
TCACCACAATTACATCCCTGTGGAACTCGCTGAGAAGCACGGGCTGTTTGTGAAACATGGTGGACGGTCA
GAGATCCTTTTGGATAATGATTCAAGAGAAGGGCTATGCAATGTAGTGTTTGAGATTGCATCTGTTGCCA
ATGTGCATATCTTGAAAGCTCGTGAGCTGGCGGGAAAAGTTCCTGCAGAAGCTAAACCGGTTCTGCTTCA
TTCTGTTCCGGTACAGGTTCTTCTGGATTCGTTGAGTAAAGTACATTTCGATGTGTTTGATCCGAGGATG
CAGAGAGGAGTTCTTGGTGTTCCTCCTCTTTGGTTTCAGGTTAGACTCAAGTGGTATTCATGGAGATCTA
CGTTCTGA
Upstream Sequence
GCCGTTTGACTACATTGCCCAATCGACACCTCTCCGGCACGATTGTTCAGAGTTCGATTTCCATTTTCGG
GTGGAAAGATCGATAATTTTTGATTCGGATGGTAGATTCCGTTCCGACAGATCTTCGGATTCGGACACCC
TGATCTCAGATTCCCTAAAGTTTAGGAGAAGAGAAAAGAAGTACCCTTTAAGCTAACCTGATGAACGGAC
CACGAGGCTCGAGTAGTTTGCGTTCAGCATTCTCTTACTGTGTACAACAAGTGCGTAACTATGACTACCA
CCACTACCTCTGTCTCCTTGAACTCCCACCTCAGATGCGTAAAGCCGCCTTTGCACTCCGCGCTTTCAAC
GTAGAAACCGCAAGAGCCATGGATGTTGCATCTGATCCCAAAATCGGCTTGATGCGTTTACTCTGGTGGC
AAGAAGCAATCGACAAACTCTACACGAAAAAAACCGTAAACCATCCAGCTGCACAAGCTCTCTCCTGGGC
GATATCAGAGCATAGCATCAGTAAACCGTGGCTTAAACGCTCGGTTGAAGCAAGAATCCAAGATGCTCAG
AGAGAAGCTGATGATATACCAGAGAGTGTTGAGGAGCTTGAGAAGTACGCTGAAGATACGGTTTCGACCC
TTCTGTATAATACACTCCAAGCTGGCGGGATTAGTTCAACAGCAGCGGACCACGCAGCTTCACACATCGG
TAAAGCCAGTGGTCTTGTCTTGCTGCTGAAGTCGTTGCCTTACCATTGTACTAGAAACCGTCACCACAAT
TACATCCCTGTGGAACTCGCTGAGAAGCACGGGCTGTTTGTGAAACATGGTGGACGGTCAGAGATCCTTT
TGGATAATGATTCAAGAGAAGGGCTATGCAATGTAGTGTTTGAGATTGCATCTGTTGCCAATGTGCATAT
CTTGAAAGCTCGTGAGCTGGCGGGAAAAGTTCCTGCAGAAGCTAAACCGGTTCTGCTTCATTCTGTTCCG
GTACAGGTTCTTCTGGATTCGTTGAGTAAAGTACATTTCGATGTGTTTGATCCGAGGATGCAGAGAGGAG
TTCTTGGTGTTCCTCCTCTTTGGTTTCAGGTTAGACTCAAGTGGTATTCATGGAGATCTACGTTCTGAGA
AACTTCATGTCTATGTTTTTTTTTTCTGGTTTTAAAGACATTATTACAAAACTGTTCCAGTTTGTTTGTA
TTTTTGCCTTGTAATAATACAAACAGTGATGGATTGGATACAAAATAAAAGAATTTGTTTCATTTCTTTT
GCTTTCAGATAATATACAC
Downstream Sequence
GAAACTTCATGTCTATGTTTTTTTTTTCTGGTTTTAAAGACATTATTACAAAACTGTTCC
AGTTTGTTTGTATTTTTGCCTTGTAATAATACAAACAGTGATGGATTGGATACAAAATAA
AAGAATTTGTTTCATTTCTTTTGCTTTCAGATAATATACACAGTTACATAAAAGTGTACA
ATATGTTATAGTTTTTTTTTGAAAAAAAACAATATGTTATAGTTGAAGAAGCCCATTTTC
ATGGATTCATGTTTCCTACAAAAGCCTGGGATCATTGTAGTGTATGAATATGATACAACA
TCGTACTCAAATCCATTGAATGTGAGGCCACAGAACAAATTCTAAGCATTATCCATATTA
CCAGCATCGCTTCATATAATATCAAGATCCATGCCACTCTTGCTTCCCACACTAATTAGT
AAATACAACCATTGCTTACTACTCAATCTTCCTGTTAGTAGAAAGACCATATAACAAAAT
GTTGCAGGTCCTAAAATTGGCAGCCGAACCATGAGAATCCATTTGTCTGAATTTTTTTTG
AGTATAGTGGTGATTGGTTGAGTTGTAGAAGCTGACTTTAATATTAATCTACAACTTTTA
AATCATCAATCATGATTTATCTTATTTTCTAAAGCTATACCCAAAAGATAAAAATAAAAA
GATGTAAAAGCTTTATTTTCTAAAGCCCAATCTTTTTGGATGTATAAAATATATTACTCT
AGCAATCAATTTTAAAGGTACATCACCTAAATAAAAAAATTCTACATTTTAAATTCTACA
GTTACAGTTCAACCAATCACCCCCATATCTAACTTTTTCACTTAAAACAACCTTGGATAA
GAGTGTCGTAAGAAACTGTATTGCCATTTGCCAAGTAGTTGTTTTTGAGACATCTTGCTC
AAGAGTTTCATCACATCATATACTTACTTAGGCTTGCAAAAAATCAAGAGAGTACTCCTT
TGTTACCATCAACTCAAGCATTGCTGGGCCTCATCTAAGCGACTATGCATACAAAGCATG
TCTAATTTTTAATTCTAAAAATTTACTCATACTTGTAGTTAGGAAACCGGTTCTCACTAT
AAGCTTGTTCAAGCATGTGCTTGGAGCTTCTAATGTGTTTAATAATTGTGAAGGCCAAAA
AATATTTTCAAATACCAACATATGTACTTTTGTTGACCATCTTAATTGTAAAAAGGTCAA
CGGAGAAGACTGTTGTTGTTGTTGCTGTTCCAGAAACTGATTTGGATAACCATGTAGAAG
AAAACACTCAATCGTATCATACCCTTGTGATTGCAATGTGAACAAAAACAATTTGAATTC
AACTTCATTGATTAGTAGCAGCATCAGCCAATGGTGAAAAGGTGTTGAAGACTCTGTTTG
AACAAAAAAGCATATAACTTCATTTATTTATCTTTTTCACACGCATTGTAGAGATAGTTT
GTTCAGCTCGTATAACACGAGAGTAGATAGAATTTAAATGGGGAAGAGGTTCTTCATCAA
TTATCTAAGACCGAATGATAGCAAAATGAGTTTCGTCAAAGCCGAAAAGAAACTTGTGGA
TTTGAGCATCCTCTCGTTCTTTCTCGATTGCTGTAATGTAGAACAAGTACACATATTAGC
AGTAGTAACTCAGAGCTTTGAAAGCCGACCATAATACTCAATGACTAATTGATCATTTTG
TTTGCAGTTGGTGATATCATCTTCAAGCCTGTGTTTAAAGACTCCTTTTTAACAAATAAT
CTCATTGTAGTGATTCCTAAAGCTTGAATGCATCAGGAACATGAGTAACAGTCGATAAGA
CTAGGTATGTGGGTTAAGATAGTTCGGATCGGGTAGTTTGGAATTCAGGTAGTTCGGTTC
GACCAAAGTATTGCCAAATTGAACCGGAAAAAATCAGTTCAGTTCGGTTTTAATTTTTTT
ACTAAAATTAATCAAAGTTATTGGTTTCGATAATATTCGGTTAAAAATTCAGATAATTTC
AGTTAGTTTGGTTGCTTCGT
Pro Sequence
MNGPRGSSSLRSAFSYCVQQVRNYDYHHYLCLLELPPQMRKAAFALRAFN
VETARAMDVASDPKIGLMRLLWWQEAIDKLYTKKTVNHPAAQALSWAISE
HSISKPWLKRSVEARIQDAQREADDIPESVEELEKYAEDTVSTLLYNTLQ
AGGISSTAADHAASHIGKASGLVLLLKSLPYHCTRNRHHNYIPVELAEKH
GLFVKHGGRSEILLDNDSREGLCNVVFEIASVANVHILKARELAGKVPAE
AKPVLLHSVPVQVLLDSLSKVHFDVFDPRMQRGVLGVPPLWFQVRLKWYS
WRSTF
mRNA Sequence
GCCGTTTGACTACATTGCCCAATCGACACCTCTCCGGCACGATTGTTCAGAGTTCGATTTCCATTTTCGG
GTGGAAAGATCGATAATTTTTGATTCGGATGGTAGATTCCGTTCCGACAGATCTTCGGATTCGGACACCC
TGATCTCAGATTCCCTAAAGTTTAGGAGAAGAGAAAAGAAGTACCCTTTAAGCTAACCTGATGAACGGAC
CACGAGGCTCGAGTAGTTTGCGTTCAGCATTCTCTTACTGTGTACAACAAGTGCGTAACTATGACTACCA
CCACTACCTCTGTCTCCTTGAACTCCCACCTCAGATGCGTAAAGCCGCCTTTGCACTCCGCGCTTTCAAC
GTAGAAACCGCAAGAGCCATGGATGTTGCATCTGATCCCAAAATCGGCTTGATGCGTTTACTCTGGTGGC
AAGAAGCAATCGACAAACTCTACACGAAAAAAACCGTAAACCATCCAGCTGCACAAGCTCTCTCCTGGGC
GATATCAGAGCATAGCATCAGTAAACCGTGGCTTAAACGCTCGGTTGAAGCAAGAATCCAAGATGCTCAG
AGAGAAGCTGATGATATACCAGAGAGTGTTGAGGAGCTTGAGAAGTACGCTGAAGATACGGTTTCGACCC
TTCTGTATAATACACTCCAAGCTGGCGGGATTAGTTCAACAGCAGCGGACCACGCAGCTTCACACATCGG
TAAAGCCAGTGGTCTTGTCTTGCTGCTGAAGTCGTTGCCTTACCATTGTACTAGAAACCGTCACCACAAT
TACATCCCTGTGGAACTCGCTGAGAAGCACGGGCTGTTTGTGAAACATGGTGGACGGTCAGAGATCCTTT
TGGATAATGATTCAAGAGAAGGGCTATGCAATGTAGTGTTTGAGATTGCATCTGTTGCCAATGTGCATAT
CTTGAAAGCTCGTGAGCTGGCGGGAAAAGTTCCTGCAGAAGCTAAACCGGTTCTGCTTCATTCTGTTCCG
GTACAGGTTCTTCTGGATTCGTTGAGTAAAGTACATTTCGATGTGTTTGATCCGAGGATGCAGAGAGGAG
TTCTTGGTGTTCCTCCTCTTTGGTTTCAGGTTAGACTCAAGTGGTATTCATGGAGATCTACGTTCTGAGA
AACTTCATGTCTATGTTTTTTTTTTCTGGTTTTAAAGACATTATTACAAAACTGTTCCAGTTTGTTTGTA
TTTTTGCCTTGTAATAATACAAACAGTGATGGATTGGATACAAAATAAAAGAATTTGTTTCATTTCTTTT
GCTTTCAGATAATATACAC