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Detail for ZS11_A10G20050.t1

Genome:
ZS11: ZS11_A10G20050.t1
ZS11_v0: BnaA10T0168600ZS
WE: WE_A10G20410.t1
WE_v0: BnaA10T0164800WE
Darmor: A10p18840.1_BnaDAR
BH: BnaA10T176000BH
Quinta: BnaA10T0160100QU
ZS2: BnaA10T167200ZS2
SW: BnaA10T180600SW
Express61: A10p015590.1_BnaEXP
Xiaoyun: BnaA10G0168700XY
P202: BnaA10G013880P202.1
BL: BnaA10T176000BH
TA: BnaA10T167100TA
Da-Ae: Not available
RB: BnaA10T173300RB
No2127: BnaA10T0111500NO
P130: BnaA10G018600P130.4
Length: 217
KOG ID: -
KOG E-value: Not available
KOG Score: Not available
KOG Annotation: -
Biological Process: -
Cellular Component: GO:0009535(chloroplast thylakoid membrane),GO:0010598(NAD(P)H dehydrogenase complex (plastoquinone))
Molecular Function: -
KEGG Ortholog: K23052 ndhU; NAD(P)H-quinone oxidoreductase subunit U, chloroplastic [EC:7.1.1.-]
NR Protein: RID41554.1
NR E-value: 6.800000e-119
NR Score: 431.8
NR Annotation: RID41554.1 hypothetical protein BRARA_J01509 [Brassica rapa]
SwissProt Protein: Q84VQ4|NDHU_ARATH
SwissProt E-value: 8.220000e-126
SwissProt Score: 357.0
SwissProt Annotation: NAD(P)H-quinone oxidoreductase subunit U, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhU PE=1 SV=1
CDS Sequence (663 bp)
ATGGCTTCCTTATCTCCGATGACTCGACCTTCCTTAGTCCACATTCCCGGCGAATCCATCCCCCACCATG
TACCAAGCACGTGCTCTTTCCCGCGTAAGCTAACAATCACAAAACGGATTATCTGTTCGCCGGCGAGGAG
TTCCGGTGAGACATCGACGGAGGGAGAGACCGACGGTGGATCTAGCACTGCCGTCGATGAAGCGCCGAAA
GAGACTCCATCTTTGATCTCTGCTCTCAACGTCGAACGCGCTCTACGTGGCCTTCCCATTACAGATGTGG
ATCACTACGGTCGGCTTGGACTTCCCAGAAACTGTTCTTATGATCAGGTAAGAATTGGTTACCAAGATAG
AGTTAAGGAGCTAATGGAACAAGGGTTAGAAGAAGAGCAACTCAAGAACAAGATGGAGCTTGTCAAAGAT
TCGTATACAATTTTGTCGTCCATGGAAGAGAGGAGAATGTATGATTGGAGTCTAGCCAGAAGCGAAAAAG
CAGAGCGGTACATTTGGCCCTTCGAGGTTGACATCATGGAACCGTCCAGGGAAGAGCCGCCTCCTCAGGA
ACCAGAAGATGTAGGACCAACGAGGATTCTTGGATACTTCATTGGGGCGTGGCTCGTCCTTGGTGTCGCC
CTCTCTGTTGCACTCAATCGTTAG
Upstream Sequence
ATCGAAATCACTTTTCTGAGTGAACATTTTAGCGCCATGGCTTCCTTATCTCCGATGACTCGACCTTCCT
TAGTCCACATTCCCGGCGAATCCATCCCCCACCATGTACCAAGCACGTGCTCTTTCCCGCGTAAGCTAAC
AATCACAAAACGGATTATCTGTTCGCCGGCGAGGAGTTCCGGTGAGACATCGACGGAGGGAGAGACCGAC
GGTGGATCTAGCACTGCCGTCGATGAAGCGCCGAAAGAGACTCCATCTTTGATCTCTGCTCTCAACGTCG
AACGCGCTCTACGTGGCCTTCCCATTACAGATGTGGATCACTACGGTCGGCTTGGACTTCCCAGAAACTG
TTCTTATGATCAGGTAAGAATTGGTTACCAAGATAGAGTTAAGGAGCTAATGGAACAAGGGTTAGAAGAA
GAGCAACTCAAGAACAAGATGGAGCTTGTCAAAGATTCGTATACAATTTTGTCGTCCATGGAAGAGAGGA
GAATGTATGATTGGAGTCTAGCCAGAAGCGAAAAAGCAGAGCGGTACATTTGGCCCTTCGAGGTTGACAT
CATGGAACCGTCCAGGGAAGAGCCGCCTCCTCAGGAACCAGAAGATGTAGGACCAACGAGGATTCTTGGA
TACTTCATTGGGGCGTGGCTCGTCCTTGGTGTCGCCCTCTCTGTTGCACTCAATCGTTAGCCTCTTCTTT
CACCATCTTCTTCCTTACATTAAAATTAAATCATTTCGAAATATGTATATTTAGTAGTCGTTTATATACC
CAAGTGTATTATTAGTTATCTGACGAATGTTAAAGCTACGTAATTGCAATAACGTTATGTGCGTATTATT
GCGGATCTTCGAATATTAGGGCTTACAATGCAATCATATGTTTATTGTTTTTAATCTATAATATAGGAGT
TCCAGCTTAA
Downstream Sequence
CGTAATCTCTCTCTCTTTTTTTTTTTTTTTTGAATGTTGGACGTGGAAGAAAAAACATTG
ATAGCGGTTTGGATTAGTATGCAGCCATTACAGATGTGGATCACTACGGTCGGCTTGGAC
TTCCCAGAAACTGTTCTTATGATCAGGTTTGTGTGTGTGTGTGTGTGTTTCTGTGTCCTA
AACTTCAGAAACGTTACTTTGACTATAAAAGGATTTATTTAATTTTATTTATAAAATTAA
TGACTTGTCATACAAGTTTTCTTTCCTCACATTGATATTAAATATAGAATCTGATTCAAT
ATGAAACTGTTTTTTTGGTTATCAGGTAAGAATTGGTTACCAAGATAGAGTTAAGGAGCT
AATGGAACAAGGGTTAGAAGAAGAGCAACTCAAGAACAAGATGGAGCTTGTCAAAGTAAA
CACAAAAAAACAAACCAAACCTTTTTGAATCTTCTCATATTTTTCTCTGTGAGTGAGATT
CATGGGAGTCATATATGTATTTTAGGATTCGTATACAATTTTGTCGTCCATGGAAGAGAG
GAGAATGTATGATTGGAGTCTAGCCAGAAGCGAAAAAGCAGAGCGGTACATTTGGCCCTT
CGAGGTTGACATCATGGAACCGTCCAGGGAAGAGCCGCCTCCTCAGGTATATGCAGTCCG
CTCTCTTTTGAGATTTGAGATCGGCTTTAATATTAATATTAATATACTAATGAGCTTGGG
GAGAAATGAGTACAGGAACCAGAAGATGTAGGACCAACGAGGATTCTTGGATACTTCATT
GGGGCGTGGCTCGTCCTTGGTGTCGCCCTCTCTGTTGCACTCAATCGTTAGCCTCTTCTT
TCACCATCTTCTTCCTTACATTAAAATTAAATCATTTCGAAATATGTATATTTAGTAGTC
GTTTATATACCCAAGTGTATTATTAGTTATCTGACGAATGTTAAAGCTACGTAATTGCAA
TAACGTTATGTGCGTATTATTGCGGATCTTCGAATATTAGGGCTTACAATGCAATCATAT
GTTTATTGTTTTTAATCTATAATATAGGAGTTCCAGCTTAATCCTAATTAATAGTACTAG
AGCTTTTCGGCTACGCCGGTTTATTTTCATTAATTTTAAAATAGTATGTTAGTATATTTA
AAGATATAGTATATACTGAAAACTGTGATAAATATAAATTATTAAAATAAAATTTAATTA
TAATGCAAACAAAAATAATTATAAAATCTATTATATTATCACAGTAGAAAAACAGGTTAA
AATCTCAATCATTTTAAATTTTAATTTCAGAACTCCTCTGTTCATTATATCTTTCTGATT
CAGATTGTATAATTAGTGGCTAAAAAGTTTAAGTTCTTACCAAGAAAACTAAACTTTCTA
GAAGTATGCATGAAAAATAAAATGGGGTTGCTGAAATTTTCTTCTAAATTCAAAAAAGTT
AGATACAATAAATATTTTATTTTGTAAATACCTTGATAATAGGTAAAAAGATAATTTCTT
ATTGAGTATTTTTCTGAAATTTCATAAATGTTGAAAAAATATAATAGTTTTCGAAGGTGA
TTGGTAAGTACTCTGAATGCTTTCCACACTTTTTCACAACTAATCTAATTTACCAATCAT
GCTTTAAAAAAATAATTTAAAGGTACAATTCAAAAGTTAAACTGAAAATAGATTGGCTAT
GAAAATCATTTTCTTAAGAACTTATATTTAGTGCTTTGAAAGTTATTGATATAAATCTAT
TTCAATAGATTAAGTTTACAGCTACAACATTTTTTTTTACAAATTTACAGCTTATATTCT
AAAGCAAATAATTAAGTTTACAGCTACAAAGACTAAATATCTCTACCAAATATTATTTTA
TTTTGTCGATTCTCTGCTAAATAATATCTTTTAAAAATTATTCGTTTTCATGAGATTCAT
GTTTTTCATCATCGATTTCCAAGAACAAAGATAGAAGATATTATAGATATAGATATTAGA
TAACAACATATGAACTTTGT
Pro Sequence
MASLSPMTRPSLVHIPGESIPHHVPSTCSFPRKLTITKRIICSPARSSGE
TSTEGETDGGSSTAVDEAPKETPSLISALNVERALRGLPITDVDHYGRLG
LPRNCSYDQVRIGYQDRVKELMEQGLEEEQLKNKMELVKDSYTILSSMEE
RRMYDWSLARSEKAERYIWPFEVDIMEPSREEPPPQEPEDVGPTRILGYF
IGAWLVLGVALSVALNR
mRNA Sequence
ATCGAAATCACTTTTCTGAGTGAACATTTTAGCGCCATGGCTTCCTTATCTCCGATGACTCGACCTTCCT
TAGTCCACATTCCCGGCGAATCCATCCCCCACCATGTACCAAGCACGTGCTCTTTCCCGCGTAAGCTAAC
AATCACAAAACGGATTATCTGTTCGCCGGCGAGGAGTTCCGGTGAGACATCGACGGAGGGAGAGACCGAC
GGTGGATCTAGCACTGCCGTCGATGAAGCGCCGAAAGAGACTCCATCTTTGATCTCTGCTCTCAACGTCG
AACGCGCTCTACGTGGCCTTCCCATTACAGATGTGGATCACTACGGTCGGCTTGGACTTCCCAGAAACTG
TTCTTATGATCAGGTAAGAATTGGTTACCAAGATAGAGTTAAGGAGCTAATGGAACAAGGGTTAGAAGAA
GAGCAACTCAAGAACAAGATGGAGCTTGTCAAAGATTCGTATACAATTTTGTCGTCCATGGAAGAGAGGA
GAATGTATGATTGGAGTCTAGCCAGAAGCGAAAAAGCAGAGCGGTACATTTGGCCCTTCGAGGTTGACAT
CATGGAACCGTCCAGGGAAGAGCCGCCTCCTCAGGAACCAGAAGATGTAGGACCAACGAGGATTCTTGGA
TACTTCATTGGGGCGTGGCTCGTCCTTGGTGTCGCCCTCTCTGTTGCACTCAATCGTTAGCCTCTTCTTT
CACCATCTTCTTCCTTACATTAAAATTAAATCATTTCGAAATATGTATATTTAGTAGTCGTTTATATACC
CAAGTGTATTATTAGTTATCTGACGAATGTTAAAGCTACGTAATTGCAATAACGTTATGTGCGTATTATT
GCGGATCTTCGAATATTAGGGCTTACAATGCAATCATATGTTTATTGTTTTTAATCTATAATATAGGAGT
TCCAGCTTAA