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Detail for ZS11_C01G41610.t1

Genome:
ZS11: ZS11_C01G41610.t1
ZS11_v0: BnaA05T0244400ZS
WE: WE_C06G22530.t1
WE_v0: Bnascaffold2533T0001000WE
Darmor: C06p23140.1_BnaDAR
BH: Bnascaffold0318T000500BH
Quinta: BnaA06T0194000QU
ZS2: BnaA04T084600ZS2
SW: BnaA04T089700SW
Express61: C09p019850.1_BnaEXP
Xiaoyun: BnaC01G0350300XY
P202: BnaC06G050740P202.1
BL: Bnascaffold0318T000500BH
TA: BnaA04T084100TA
Da-Ae: Not available
RB: Not available
No2127: BnaC01T0197100NO
P130: BnaC01G000080P130.1
Length: 503
KOG ID: KOG4668
KOG E-value: Not available
KOG Score: 513.0
KOG Annotation: Energy production and conversion
Biological Process: -
Cellular Component: -
Molecular Function: -
KEGG Ortholog: K05573 ndhB; NAD(P)H-quinone oxidoreductase subunit 2 [EC:7.1.1.2]
NR Protein: VDD65987.1
NR E-value: 7.700000e-283
NR Score: 977.6
NR Annotation: VDD65987.1 unnamed protein product [Brassica oleracea]
SwissProt Protein: P0CC48|NU2C1_COFAR
SwissProt E-value: Not available
SwissProt Score: 794.0
SwissProt Annotation: NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica OX=13443 GN=ndhB1 PE=3 SV=1
CDS Sequence (1533 bp)
ATGATCTGGCATGTACAGAATGAAAATTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATT
TGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATCCTTCTTCTGAT
GATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTTCATCTCGTCAACAAGTTTCGTAATG
AGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCAGGAAATTTCCAAACGA
ACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTCTGTATTCCTCTATCCGTAGA
GTACATTGAATGTACAGAAATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGA
ATGTTTTTATGTGGTGCTAACGATTTAATAACTATCTTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCT
ACCTATTATCTGGATATACCAAGAAAGATGTACGATCTAATGAAGCTACTATGAAATATTTACTCATGGG
TGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATTGAG
CTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTA
TATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATA
CGAAGGAGTGCGCAGGGTCAGGAACAACGAATCTCTTTATGATAAACGGATCCATTTTGCAAGTTTGTTA
TTACGGGTAGTTCCTACAAAGGATCGGACTAATGACGTATACAAGAAAGACTTGAATTCTCGATGTAGAT
GCTACATAGTTGGTTCTCATCCTTCAGAGACTACGAGTAAAGAAGTGAGGAATCCTCTTTTCGACTCTGA
CTCTCCCACTCCAGTCGTTGCTTTTCTTTCTGTTACTTCGAAAGTAGCTGCTTCAGCTTTAGCCACTCGA
ATTTTCGATATTCCTTTTTATTTCTCATCAAATGAATGGCATCTTCTTCTGGAAATCCTAGCTATTCTTA
GCATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCTTGCATATTCGTCCAT
AGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCGAGCATGATA
ACTTATATGCTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTATATTATTTGGTCTACGTA
CCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTTTTTTGGCTCTCTCTTTAGC
TCTATGTCTCTTATCCCTAGGAGGTCTTCCTCCACTAGCAGCATCTACTATACCAGGAATATCAATGAAC
CCGATTATTGCGATTGCTCAGGATACCCTTTTTAGCTTCTAG
Upstream Sequence
ATGATCTGGCATGTACAGAATGAAAATTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATT
TGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATCCTTCTTCTGAT
GATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTTCATCTCGTCAACAAGTTTCGTAATG
AGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCAGGAAATTTCCAAACGA
ACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTCTGTATTCCTCTATCCGTAGA
GTACATTGAATGTACAGAAATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGA
ATGTTTTTATGTGGTGCTAACGATTTAATAACTATCTTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCT
ACCTATTATCTGGATATACCAAGAAAGATGTACGATCTAATGAAGCTACTATGAAATATTTACTCATGGG
TGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATTGAG
CTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTA
TATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATA
CGAAGGAGTGCGCAGGGTCAGGAACAACGAATCTCTTTATGATAAACGGATCCATTTTGCAAGTTTGTTA
TTACGGGTAGTTCCTACAAAGGATCGGACTAATGACGTATACAAGAAAGACTTGAATTCTCGATGTAGAT
GCTACATAGTTGGTTCTCATCCTTCAGAGACTACGAGTAAAGAAGTGAGGAATCCTCTTTTCGACTCTGA
CTCTCCCACTCCAGTCGTTGCTTTTCTTTCTGTTACTTCGAAAGTAGCTGCTTCAGCTTTAGCCACTCGA
ATTTTCGATATTCCTTTTTATTTCTCATCAAATGAATGGCATCTTCTTCTGGAAATCCTAGCTATTCTTA
GCATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCTTGCATATTCGTCCAT
AGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCGAGCATGATA
ACTTATATGCTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTATATTATTTGGTCTACGTA
CCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTTTTTTGGCTCTCTCTTTAGC
TCTATGTCTCTTATCCCTAGGAGGTCTTCCTCCACTAGCAGCATCTACTATACCAGGAATATCAATGAAC
CCGATTATTGCGATTGCTCAGGATACCCTTTTTAGCTTCTAG
Downstream Sequence
GGTTCGTTTGAGAAATTCCTACCTCTCTATCTATCTCTGAGATGTTTGGATTTTTCAAAA
CTCCATGGACATGCAGAAGAGAAATGCTATCCCCACGCAGACCAAGACAGAACTTTGACT
TGTTCAAATAACAATTAATGTGAAGCAGGGTCAGGAACAACGAATCTCTTTATGATAAAC
GGATCCATTTTGCAAGTTTGTTATTACGGGTAGTTCCTACAAAGGATCGGACTAATGACG
TATACAAGAAAGACTTGAATTCTCGATGTAGATGCTACATAGTTGGTTCTCATCCTTCAG
AGACTACGAGTGTAATAGGAGCATCCGTCGACAAAAGGATCACCCTAAGATGATCATCTC
ATGGCTATTGAGAACGAATCAAATCAGATGGTTCCATTTCTCAATCTTTCGGACGTGCTC
CTACGGAACCAAGGTCGAAACGATTGAGAAAAATCAGTCATTCACAACCACTGATGAAGG
ATTCCTCGAAAATTTAAGGATTAGTCATCCGTTTTAGAAAGGATTCGATCTTATACATAC
GCGAGGAAAGTAATCAAAAAAGAAAGAAGATGAGTTCTTCTTTACTTTTATCACTTAGGA
GCCGTGCGAGATGAAAGTCTCATGCACGGTTTTGAATGAGAGAAAGAAGTGAGGAATCCT
CTTTTCGACTCTGACTCTCCCACTCCAGTCGTTGCTTTTCTTTCTGTTACTTCGAAAGTA
GCTGCTTCAGCTTTAGCCACTCGAATTTTCGATATTCCTTTTTATTTCTCATCAAATGAA
TGGCATCTTCTTCTGGAAATCCTAGCTATTCTTAGCATGATATTGGGGAATCTCATTGCT
ATTACTCAAACAAGCATGAAACGTATGCTTGCATATTCGTCCATAGGTCAAATCGGATAT
GTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCGAGCATGATAACTTAT
ATGCTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTATATTATTTGGTCTA
CGTACCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTTTTTTG
GCTCTCTCTTTAGCTCTATGTCTCTTATCCCTAGGAGGTCTTCCTCCACTAGCAGGTTTT
TTTGGAAAACTCCATTTATTCTGGTGTGGATGGCGGGCAGGCCTATATTTCTTGGTTTCA
ATAGGACTCCTTACGAGCGTTCTTTCTATCTACTATTATCTAAAAATAATCAAGTTATTA
ATGACTGGACGAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAATATCCCCTTTA
AGATCAACCAATTCCATCGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCA
GGAATATCAATGAACCCGATTATTGCGATTGCTCAGGATACCCTTTTTAGCTTCTAGAAT
CTATTTCTTAGTTCAAGATCCCTCTTACTAACTGGAATCAAAGAATTAGTAGATCGGTTC
CGCCCAAAATGGGAATGGACTAAGGTTATGAACTTATAATCTATAATCTGATGATCGAGT
CGATTCCATGATTATAAGTTCATTCCATACCGGACCAGACCGGAATAAGGTTATATACAT
TCTCATTATGAGAAGGGGTCATTCGAGCGTATCTAAATAGATACTATGTTTACATAGGGA
TCCCTACGTCGTTACATTCCATTTAGGATTAGGAATAGGCGAAATCTGACCTACTTTTTA
CATATCTCTCGTTATTTGGGACCCTATTCACCTCTTTGGTTGGACTTCTATTGAATCGAG
AAATAGGTTTGATTGTCCATCTTTTTGATATAATATTAATATATATATAAGGCATCCTCC
GGATAAGGATAATTCAAATCTAAGCAATTAGATGTCCGACTCGGGCCTATATGACATGAC
CGATCAATAGAAATACTTCAACACTCCACCTTTGTCATATATTCAATACACCGTACTAGA
TAGATATCATATTTATGGAA
Pro Sequence
MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDS
TSDQKDIPWLYFISSTSFVMSITALLFRWREEPMISFSGNFQTNNFNEIF
QFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLI
TIFVALECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSW
LYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSLAPSH
QWTPDVYEGVRRVRNNESLYDKRIHFASLLLRVVPTKDRTNDVYKKDLNS
RCRCYIVGSHPSETTSKEVRNPLFDSDSPTPVVAFLSVTSKVAASALATR
IFDIPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQI
GYVIIGIIVGDSNGGYASMITYMLFYISMNLGTFACIILFGLRTGTDNIR
DYAGLYTKDPFLALSLALCLLSLGGLPPLAASTIPGISMNPIIAIAQDTL
FSF
mRNA Sequence
ATGATCTGGCATGTACAGAATGAAAATTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATT
TGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATCCTTCTTCTGAT
GATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTTCATCTCGTCAACAAGTTTCGTAATG
AGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCAGGAAATTTCCAAACGA
ACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTCTGTATTCCTCTATCCGTAGA
GTACATTGAATGTACAGAAATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGA
ATGTTTTTATGTGGTGCTAACGATTTAATAACTATCTTTGTAGCTCTAGAATGTTTCAGTTTATGCTCCT
ACCTATTATCTGGATATACCAAGAAAGATGTACGATCTAATGAAGCTACTATGAAATATTTACTCATGGG
TGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATTGAG
CTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTA
TATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATA
CGAAGGAGTGCGCAGGGTCAGGAACAACGAATCTCTTTATGATAAACGGATCCATTTTGCAAGTTTGTTA
TTACGGGTAGTTCCTACAAAGGATCGGACTAATGACGTATACAAGAAAGACTTGAATTCTCGATGTAGAT
GCTACATAGTTGGTTCTCATCCTTCAGAGACTACGAGTAAAGAAGTGAGGAATCCTCTTTTCGACTCTGA
CTCTCCCACTCCAGTCGTTGCTTTTCTTTCTGTTACTTCGAAAGTAGCTGCTTCAGCTTTAGCCACTCGA
ATTTTCGATATTCCTTTTTATTTCTCATCAAATGAATGGCATCTTCTTCTGGAAATCCTAGCTATTCTTA
GCATGATATTGGGGAATCTCATTGCTATTACTCAAACAAGCATGAAACGTATGCTTGCATATTCGTCCAT
AGGTCAAATCGGATATGTAATTATTGGAATAATTGTTGGAGACTCAAATGGTGGATATGCGAGCATGATA
ACTTATATGCTGTTCTATATCTCCATGAATCTAGGAACTTTTGCTTGCATTATATTATTTGGTCTACGTA
CCGGAACTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTTTTTTGGCTCTCTCTTTAGC
TCTATGTCTCTTATCCCTAGGAGGTCTTCCTCCACTAGCAGCATCTACTATACCAGGAATATCAATGAAC
CCGATTATTGCGATTGCTCAGGATACCCTTTTTAGCTTCTAG