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Detail for ZS11_C02G30210.t1

Genome:
ZS11: ZS11_C02G30210.t1
ZS11_v0: BnaA02T0042000ZS
WE: WE_C02G02310.t1
WE_v0: Bnascaffold826T0000500WE
Darmor: BNapus_Darmor_BZH_scaffold_287p00090.1_BnaDAR
BH: BnaC09T203300BH
Quinta: BnaA02T0039800QU
ZS2: BnaC09T322300ZS2
SW: BnaC09T338800SW
Express61: C09p042020.1_BnaEXP
Xiaoyun: BnaC02G0383600XY
P202: BnaC01G064010P202.1
BL: BnaC09T203300BH
TA: BnaA06T214400TA
Da-Ae: Not available
RB: BnaC09T198400RB
No2127: BnaC09T0281100NO
P130: BnaC02G047720P130.1
Length: 179
KOG ID: KOG1687
KOG E-value: 4.280000e-111
KOG Score: 317.0
KOG Annotation: Energy production and conversion
Biological Process: -
Cellular Component: -
Molecular Function: -
KEGG Ortholog: -
NR Protein: YP_005089956.1
NR E-value: 5.900000e-84
NR Score: 315.5
NR Annotation: YP_005089956.1 ndhK gene product (chloroplast) [Brassica napus]
SwissProt Protein: A4QK22|NDHK_ARAHI
SwissProt E-value: 5.930000e-112
SwissProt Score: 320.0
SwissProt Annotation: NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Arabis hirsuta OX=78191 GN=ndhK PE=3 SV=1
CDS Sequence (547 bp)
ATGAATTCCATTAAGTTTCTCGTACTTGATCGAACAACAAAAAACTCAGTTATTTCAACTACGTTAAATG
ATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGTACCAGTTGTTTACGAAGATC
AAGTCCTAGACAGGCGGACCTTATTTTAACAGCAGGTACAGTAACAATGAAAATGGCTCCTTCTTTAGTG
AGATTATATGAACAAATGCCTGAACCAAATACCGATTCTTATAGTACTGTTCGAGGGGTTGATAAGCTAA
TTCCTGTAGATGTCTATTTGCCGGGTTGTCCACCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCT
TCGTAAGAAAATAGCTAGAGAAATCTATAAGGATCGAATTAGACCTCAACggTTTTTTGTTGTACGCAGT
ACACAGACTGGAAATTATGATCAAGAATTACTCTATCCACCATCATCTACTTCAGAGATCTCTACTGAAA
CATTTTTTAAATACAAAAGCCCAGTATCTTCCCACGAATTAGTGAATTAG
Upstream Sequence
ATGAATTCCATTAAGTTTCTCGTACTTGATCGAACAACAAAAAACTCAGTTATTTCAACTACGTTAAATG
ATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGTACCAGTTGTTTACGAAGATC
AAGTCCTAGACAGGCGGACCTTATTTTAACAGCAGGTACAGTAACAATGAAAATGGCTCCTTCTTTAGTG
AGATTATATGAACAAATGCCTGAACCAAATACCGATTCTTATAGTACTGTTCGAGGGGTTGATAAGCTAA
TTCCTGTAGATGTCTATTTGCCGGGTTGTCCACCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCT
TCGTAAGAAAATAGCTAGAGAAATCTATAAGGATCGAATTAGACCTCAACggTTTTTTGTTGTACGCAGT
ACACAGACTGGAAATTATGATCAAGAATTACTCTATCCACCATCATCTACTTCAGAGATCTCTACTGAAA
CATTTTTTAAATACAAAAGCCCAGTATCTTCCCACGAATTAGTGAATTAG
Downstream Sequence
TGTTTTATTGAATTTGCCTCATTAATAGGCTAGaTTTGATTTTGATCGTTATGGGCTAGT
ACGAAGATCAAGTCCTAGACAGGCGGACCTTATTTTAACAGCAGGTACAGTAACAATGAA
AATGGCTCCTTCTTTAGTGAGATTATATGAACAAATGCCTGAACCAAAGTATGTTATTGC
TATGGGAGATGTACAATTACAGGGGGGATGTTCAGTACCGATTCTTATAGTACTGTTCGA
GGGGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCACCTAAACCAGAG
GCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAAATCTATAAGGAT
CGAATTAGACCTCAACgggTAATCGGTGTTTTACTACCAATCACAAGTTTTTTGTTGTAC
GCAGTACACAGACTGGAAATTATGATCAAGAATTACTCTATCCACCATCATCTACTTCAG
AGATCTCTACTGAAACATTTTTTAAATACAAAAGCCCAGTATCTTCCCACGAATTAGTGA
ATTAGGGAGGATTTGAGAGAATAAGAAAAAAATCTTCATAAATTAGAACTCATGGTAAAT
GTGAAATACTTAAATTTATATAAAAAAGGTGTGGGGGAAATAAAAAAGATGCAGGGCACT
TTGTCCGCGGGCTGGTTCATAGATCGTTGGGCTTCGATTACCAAGGAATAGAGACTTTAC
AAATAAAGCCCGAAGATTGGCATTCTATTGCTGTAATTTTATATGTATATGGTTACAATT
ATTTACGTTCCCAATGTGCCTATGATGTGGCACCAGGTGGTCTCTTAGCCAGTGTGTATC
ATCTTACGAGAATAGAATATGGTGTCAATCAAGCGGAAGAAGTTTGCATAAAAGTATTTA
CTCACAGGAGTAATCCCAGAATTCCATCTGTTTTTTGGGTTTGGAAAAGTACGGATTTTC
AAGAACGGGAATCTTATGATATGCTAGGAATCACTTATGATAGCCATCCGCGGCTGAAAC
GGATCTTAATGCCCGAAAGTTGGATAGGGTGGCCTTTACGTAAGGATTATATTGCCCCCA
ATTTTTATGAAATACAAGGTGCTTATTGAGTGATTAAAACTTTGAATGATAAAAATGAGT
GTTAGTTTctacaactctgaaccttcatgaatattttgaattagtcgttttagattaaac
aaacagaagaattaaggtcttattcatattattatagaTAGCTTAATCTTCAATTTGAAA
GATATTTTTTTCCTAAAAGCCGAGCCAATAGGATGAActaaaaaaaaagagttcttcact
atgaactttgtatcatgcacataacttagtcaactttagtcacaTAACTGGGAATGAATA
AATAAGATCGGAAAGCAATACAATAAATGGGGGGGGGGGGGGTAAAATTCTATTTCTATT
GTATCTAATCTAATGAATCTTGGGGGTATTTATGCCCTTCAACGATAGATACTATAGATA
TAGATAGATATAGATCTTTTGTTTTTACTTTTTTTTTATTCTTTCAACCAGAACTTTCCT
TTCGAATATGTATTAGGTATAAAGTCTTATACATTTTTTTTGAACGGATGGATCCACAAC
ATGAACAAAAAAAGAGAGGGGGATAAAGGAttattgcacttttttactaaagaTACGTTT
AATTTGAAGACTATAAACTTATCAAAATTAATCAATACTATGCCAAGAACGAGATTTGAA
CTGGTGACACGAGGATTTTCAGTCCTCTGctCtACcAACtGAGCTATCCCGGCCATTACC
AAAGGATCATTCTCGTTTTGTGAGATGACTTAGGGCGAGGTCAATTAAAAGAAACGCGGC
AGGAGTAAATGAAAAAAGTATtggaccggaatttattggatcttcaaaagaagactttct
aagttttagaatgaaaaatgatttagattcgaataattcaaatcgataTTTCTATCTCAT
tTGTATATGTATGATATATC
Pro Sequence
MNSIKFLVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCLRRSSPR
QADLILTAGTVTMKMAPSLVRLYEQMPEPNTDSYSTVRGVDKLIPVDVYL
PGCPPKPEAVIDAITKLRKKIAREIYKDRIRPQRFFVVRSTQTGNYDQEL
LYPPSSTSEISTETFFKYKSPVSSHELVN
mRNA Sequence
ATGAATTCCATTAAGTTTCTCGTACTTGATCGAACAACAAAAAACTCAGTTATTTCAACTACGTTAAATG
ATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGTACCAGTTGTTTACGAAGATC
AAGTCCTAGACAGGCGGACCTTATTTTAACAGCAGGTACAGTAACAATGAAAATGGCTCCTTCTTTAGTG
AGATTATATGAACAAATGCCTGAACCAAATACCGATTCTTATAGTACTGTTCGAGGGGTTGATAAGCTAA
TTCCTGTAGATGTCTATTTGCCGGGTTGTCCACCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCT
TCGTAAGAAAATAGCTAGAGAAATCTATAAGGATCGAATTAGACCTCAACggTTTTTTGTTGTACGCAGT
ACACAGACTGGAAATTATGATCAAGAATTACTCTATCCACCATCATCTACTTCAGAGATCTCTACTGAAA
CATTTTTTAAATACAAAAGCCCAGTATCTTCCCACGAATTAGTGAATTAG