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DETAIL

Detail for ZS11_A01G00060.t1

Genome:
ZS11: ZS11_A01G00060.t1
ZS11_v0: BnaA01T0002700ZS
WE: WE_scaffold0003G03030.t1
WE_v0: Bnascaffold286T0001200WE
Darmor: A01p00130.1_BnaDAR
BH: BnaC01T002300BH
Quinta: BnaC08T0253300QU
ZS2: BnaA01T001700ZS2
SW: BnaC01T002300SW
Express61: A01p000160.1_BnaEXP
Xiaoyun: BnaA01G0001600XY
P202: BnaA01G000170P202.2
BL: BnaC01T002300BH
TA: BnaA01T001300TA
Da-Ae: rna-gnl|WGS:JAGKQM|BnaA01g00320D
RB: BnaC01T001900RB
No2127: BnaC08T0261700NO
P130: BnaA01G000170P130.2
Length: 649
KOG ID: KOG2333
KOG E-value: Not available
KOG Score: 1157.0
KOG Annotation: General function prediction only
Biological Process: -
Cellular Component: -
Molecular Function: -
KEGG Ortholog: K05544 DUS3; tRNA-dihydrouridine synthase 3 [EC:1.3.1.89]
NR Protein: XP_013733370.1
NR E-value: Not available
NR Score: 1219.9
NR Annotation: XP_013733370.1 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like [Brassica napus]
SwissProt Protein: Q9T0J6|DUS3L_ARATH
SwissProt E-value: Not available
SwissProt Score: 1164.0
SwissProt Annotation: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Arabidopsis thaliana OX=3702 GN=At4g38890 PE=1 SV=2
CDS Sequence (1977 bp)
ATGTCCGATGTAGTAGCTGAGCTGGCGGAAGGAGATGCAAAGCCGACGAAGCAGTTCAGTGTGTACGAAG
CGACATCGGAGGAGCTTATAGAACGGTCGATGGCGCCTATAAAAAAGGAGTTCCTATGCCCTCCTCCGAG
CCGTTCCCTAAAGCAAAGTGACGTGAAGGCGCCTCATCCGAGCTTAGTCCAGGAGAAGAAATCGAAACGA
CAGCTCAAAAGAGAACGCCGGGAGAAATGTGCGATAAACCTGTGTCCGCAGGTTTCGAGAACAGAAGACG
TTGATTCCTGTCAGTATAAAGAGAAATGCCGCTTTAATCATGACATTCAAGCTTTCAAAGCTCAGaAACC
AGATGATATAGAGGGGCAGTGCCCATTTGTGGCCTCTGGGATCAAGTGTCAATATGGTTTATCATGCAGA
TTCTTTGGCACCCACAAAGATTTATCTGGAATTTCTGATGCCGAGATTAACTTTTTCAACAAAGAGACAC
AGAGGCTTTTATGGAAAAATAACATGACTTTTCCCAAGGCAGATGCCAAACTTAAATCCCTTGGCCTTAT
GGGCCATGCCAAAAAAAGCAATGTCCCTCAAGAGAATGACGCAGAAAAACCTCTAGATGGTGCTCAGACA
AATGAAGATGTTGATATTCCTGGACCATTAGAAACTGAAGATGTTCGTCCCACGAAAAAGGCAAAATCTG
ACGAGACTTCTAAACTTGGAGACATTATTGATGGGGTGATGAATGTGGACGATGAAACGGAAAAGACCGG
GCATTCTACTTCAAAAGCCAAGATAGAGGATGAGGAGGATAGCATCAAAGTTGTTGAAACCGACGGGAGC
CTAAAATCGCACCCTCGCGAAAAGAAAAAGCTTATTGATTTTAGGGATAAGTTGTACCTTGCACCCCTAA
CAACTGTGGGCAATCTTCCCTTCAGAAGACTTTGCAAAGTTTTGGGAGCTGATGTGACTTGTGGTGAGAT
GGCCATGTGTACAAATCTTTTGCAGGGCCAAGCTTCCGAATGGGCTCTGCTTAGAAGGCATTCATCGGAA
GATCTGTTTGGTGTTCAGATTTGCGGTTCTTTTCCAGACACGGTGTCTCGTGCGGTTGAGCTTATAGATC
GAGAATGCACGGTTGATTTCATAGACATCAACATGGGCTGCCCGATAGATATGGTTGTGAACAAAAGTGC
TGGTTCAGCTCTTCTCAACAAACCATTACGAATGAAGAACATCGTGGAGGTCTCTTCTTCCATTGTTGAA
ACACCTATCACTATCAAGGTACGAACTGCATTTTTTGAGGGTAAGAACCGGATAGACTCGTTAATTTCAG
ATATTGGGGATTGGGGAGCCACTGCAGTGACGATTCATGGGCGGTCAAGACAACAACGTTATAGCAAGTC
TGCGGATTGGGACTATATATACAAGTGTACCAAAAACGCTTCCTCTAACCTACAAGTTATAGGAAATGGA
GATGTGTACTCGTTTTTAGACTGGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTG
CTCGCGGAGCACTGATCAAGCCTTGGATATTTACTGAAATTAAAGAGCAACGGCACTGGGACATTACCTC
CGGGGAAAGACTCAACATCTTCAAGGACTTTGTACGTTTTGGTCTTCAACATTGGGGATCCGACACAAAA
GGAGTTGAGACAACTAGGCATTTCTTACTGGAGTGGCTAAGCTACACGTTTAGGTACATACCTGTAGGTC
TGCTGGATGTGATCCCGCAGCAAATCAACTGGCGTCCGCCTTCTTACTTTGGTCGTGATGATCTCGAGAC
TCTCATGATGTCTGAATCTGCGGGTGACTGGGTGAGGATATCGGAATTGCTGCTTGGAAAGGTTCCGGAA
GGCTTCACGTTTGCCCCCAAACACAAATCCAACGCTTATGATCGAGCTGAAAATGGCTAA
Upstream Sequence
ATGTCCGATGTAGTAGCTGAGCTGGCGGAAGGAGATGCAAAGCCGACGAAGCAGTTCAGTGTGTACGAAG
CGACATCGGAGGAGCTTATAGAACGGTCGATGGCGCCTATAAAAAAGGAGTTCCTATGCCCTCCTCCGAG
CCGTTCCCTAAAGCAAAGTGACGTGAAGGCGCCTCATCCGAGCTTAGTCCAGGAGAAGAAATCGAAACGA
CAGCTCAAAAGAGAACGCCGGGAGAAATGTGCGATAAACCTGTGTCCGCAGGTTTCGAGAACAGAAGACG
TTGATTCCTGTCAGTATAAAGAGAAATGCCGCTTTAATCATGACATTCAAGCTTTCAAAGCTCAGaAACC
AGATGATATAGAGGGGCAGTGCCCATTTGTGGCCTCTGGGATCAAGTGTCAATATGGTTTATCATGCAGA
TTCTTTGGCACCCACAAAGATTTATCTGGAATTTCTGATGCCGAGATTAACTTTTTCAACAAAGAGACAC
AGAGGCTTTTATGGAAAAATAACATGACTTTTCCCAAGGCAGATGCCAAACTTAAATCCCTTGGCCTTAT
GGGCCATGCCAAAAAAAGCAATGTCCCTCAAGAGAATGACGCAGAAAAACCTCTAGATGGTGCTCAGACA
AATGAAGATGTTGATATTCCTGGACCATTAGAAACTGAAGATGTTCGTCCCACGAAAAAGGCAAAATCTG
ACGAGACTTCTAAACTTGGAGACATTATTGATGGGGTGATGAATGTGGACGATGAAACGGAAAAGACCGG
GCATTCTACTTCAAAAGCCAAGATAGAGGATGAGGAGGATAGCATCAAAGTTGTTGAAACCGACGGGAGC
CTAAAATCGCACCCTCGCGAAAAGAAAAAGCTTATTGATTTTAGGGATAAGTTGTACCTTGCACCCCTAA
CAACTGTGGGCAATCTTCCCTTCAGAAGACTTTGCAAAGTTTTGGGAGCTGATGTGACTTGTGGTGAGAT
GGCCATGTGTACAAATCTTTTGCAGGGCCAAGCTTCCGAATGGGCTCTGCTTAGAAGGCATTCATCGGAA
GATCTGTTTGGTGTTCAGATTTGCGGTTCTTTTCCAGACACGGTGTCTCGTGCGGTTGAGCTTATAGATC
GAGAATGCACGGTTGATTTCATAGACATCAACATGGGCTGCCCGATAGATATGGTTGTGAACAAAAGTGC
TGGTTCAGCTCTTCTCAACAAACCATTACGAATGAAGAACATCGTGGAGGTCTCTTCTTCCATTGTTGAA
ACACCTATCACTATCAAGGTACGAACTGCATTTTTTGAGGGTAAGAACCGGATAGACTCGTTAATTTCAG
ATATTGGGGATTGGGGAGCCACTGCAGTGACGATTCATGGGCGGTCAAGACAACAACGTTATAGCAAGTC
TGCGGATTGGGACTATATATACAAGTGTACCAAAAACGCTTCCTCTAACCTACAAGTTATAGGAAATGGA
GATGTGTACTCGTTTTTAGACTGGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTG
CTCGCGGAGCACTGATCAAGCCTTGGATATTTACTGAAATTAAAGAGCAACGGCACTGGGACATTACCTC
CGGGGAAAGACTCAACATCTTCAAGGACTTTGTACGTTTTGGTCTTCAACATTGGGGATCCGACACAAAA
GGAGTTGAGACAACTAGGCATTTCTTACTGGAGTGGCTAAGCTACACGTTTAGGTACATACCTGTAGGTC
TGCTGGATGTGATCCCGCAGCAAATCAACTGGCGTCCGCCTTCTTACTTTGGTCGTGATGATCTCGAGAC
TCTCATGATGTCTGAATCTGCGGGTGACTGGGTGAGGATATCGGAATTGCTGCTTGGAAAGGTTCCGGAA
GGCTTCACGTTTGCCCCCAAACACAAATCCAACGCTTATGATCGAGCTGAAAATGGCTAA
Downstream Sequence
GGTATGTCCATTTTTTTCCAAGCTTATTATTAGGATATAATGTTTTGTTTTTTTTTTTTG
CTTTTTGCAACTGAACCGAACATGCCATTTGTTTTGTTTTTTTTTTTTTGCAGAAATGTG
CGATAAACCTGTGTCCGCAGGTTTCGAGAACAGAAGACGTTGATTCCTGTCAGTATAAAG
AGAAATGCCGCTTTAATCATGACATTCAAGCTTTCAAAGCTCAGGTACTCTCTACTCTTG
ACCGAAACTAGCTTggtcgttattgagaaataatattattattattattattattttgta
actgcagaAACCAGATGATATAGAGGGGCAGTGCCCATTTGTGGCCTCTGGGATCAAGTG
TCAATATGGTTTATCATGCAGATTCTTTGGCACCCACAAAGATTTATCTGGAATTTCTGA
TGCCGAGATTAACTTTTTCAACAAAGAGACACAGAGGCTTTTATGGAAAAATAACATGAC
TTTTCCCAAGGCAGATGCCAAACTTAAATCCCTTGGCCTTATGGTATGTTGTACCGAACA
CTTGTTTCTCTTATGCTGCTGCTCTTCACTCCCATATCTTTTAGCATGCGACATATGATT
ATTATTTCTCTTCTTCGGTTTTTTTTTTGTCTCATTATTTCCATACAATTTCTAGGGCCA
TGCCAAAAAAAGCAATGTCCCTCAAGAGAATGACGCAGAAAAACCTCTAGATGGTGCTCA
GACAAATGAAGATGTTGATATTCCTGGACCATTAGAAACTGAAGATGTTCGTCCCACGAA
AAAGGCAAAATCTGACGAGACTTCTAAACTTGGAGACATTATTGATGGTTAGGATTTCTT
CTTTTATTTTCAGAAATATATCATTTCCAGAATGCCCAGATTATCTCAGATGGTTGCATA
GTTTTGTTAAGTCTTTAAAATAATATCATAGCTTTATATTAAAGAACAAGAGTTCACTCA
CATAAGAAGCGTCTTGGACAAGACAGCATCCTGATGTTACATTTTTAACTGTATTGGTAC
AGGGGTGATGAATGTGGACGATGAAACGGAAAAGACCGGGCATTCTACTTCAAAAGCCAA
GATAGAGGATGAGGAGGATAGCATCAAAGTTGTTGAAACCGACGGGAGCCTAAAATCGCA
CCCTCGCGAAAAGAAAAAGCTTATTGATTTTAGGGATAAGTTGTACCTTGCACCCCTAAC
AACTGTGGGCAATCTTCCCTTCAGAAGACTTTGCAAAGTTTTGGGAGCTGATGTGACTTG
TGGTGAGATGGCCATGTGTACAAATCTTTTGCAGGTTAGCCCACTAAGATTTACTTGTGA
TAAAAACAGTTTTTTTTTAATTTTTTGTAATAAATGTGAAAATCTGAAACTATAGGGCCA
AGCTTCCGAATGGGCTCTGCTTAGAAGGCATTCATCGGAAGATCTGTTTGGTGTTCAGAT
TTGCGGTTCTTTTCCAGACACGGTGTCTCGTGCGGTTGAGCTTATAGATCGAGAATGCAC
GGTTGATTTCATAGACATCAACATGGGCTGCCCGATAGATATGGTTGTGAACAAAAGTGC
TGGTTCAGCTCTTCTCAACAAACCATTACGAATGAAGAACATCGTGGAGGTCTCTTCTTC
CATTGTTGAAACACCTATCACTATCAAGGTAACTAGTGCCTAAGCATATATCATAACCTA
TTAATTGCATGATGTATTGGTATGTTAACCTCTCTTTACTTGCCCTCTCCTTTTTGGGTG
CCAGGTACGAACTGCATTTTTTGAGGGTAAGAACCGGATAGACTCGTTAATTTCAGATAT
TGGGGATTGGGGAGCCACTGCAGTGACGATTCATGGGCGGTCAAGACAACAACGTTATAG
CAAGTCTGCGGATTGGGACTATATATACAAGTGTACCAAAAACGCTTCCTCTAACCTACA
AGTTATAGGAAATGGAGATGTGTACTCGTTTTTAGACTGGAACAAACACAAGTCTGACTG
TCCTGAGTTGTCTAGCTGCA
Pro Sequence
MSDVVAELAEGDAKPTKQFSVYEATSEELIERSMAPIKKEFLCPPPSRSL
KQSDVKAPHPSLVQEKKSKRQLKRERREKCAINLCPQVSRTEDVDSCQYK
EKCRFNHDIQAFKAQKPDDIEGQCPFVASGIKCQYGLSCRFFGTHKDLSG
ISDAEINFFNKETQRLLWKNNMTFPKADAKLKSLGLMGHAKKSNVPQEND
AEKPLDGAQTNEDVDIPGPLETEDVRPTKKAKSDETSKLGDIIDGVMNVD
DETEKTGHSTSKAKIEDEEDSIKVVETDGSLKSHPREKKKLIDFRDKLYL
APLTTVGNLPFRRLCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSE
DLFGVQICGSFPDTVSRAVELIDRECTVDFIDINMGCPIDMVVNKSAGSA
LLNKPLRMKNIVEVSSSIVETPITIKVRTAFFEGKNRIDSLISDIGDWGA
TAVTIHGRSRQQRYSKSADWDYIYKCTKNASSNLQVIGNGDVYSFLDWNK
HKSDCPELSSCMIARGALIKPWIFTEIKEQRHWDITSGERLNIFKDFVRF
GLQHWGSDTKGVETTRHFLLEWLSYTFRYIPVGLLDVIPQQINWRPPSYF
GRDDLETLMMSESAGDWVRISELLLGKVPEGFTFAPKHKSNAYDRAENG
mRNA Sequence
ATGTCCGATGTAGTAGCTGAGCTGGCGGAAGGAGATGCAAAGCCGACGAAGCAGTTCAGTGTGTACGAAG
CGACATCGGAGGAGCTTATAGAACGGTCGATGGCGCCTATAAAAAAGGAGTTCCTATGCCCTCCTCCGAG
CCGTTCCCTAAAGCAAAGTGACGTGAAGGCGCCTCATCCGAGCTTAGTCCAGGAGAAGAAATCGAAACGA
CAGCTCAAAAGAGAACGCCGGGAGAAATGTGCGATAAACCTGTGTCCGCAGGTTTCGAGAACAGAAGACG
TTGATTCCTGTCAGTATAAAGAGAAATGCCGCTTTAATCATGACATTCAAGCTTTCAAAGCTCAGaAACC
AGATGATATAGAGGGGCAGTGCCCATTTGTGGCCTCTGGGATCAAGTGTCAATATGGTTTATCATGCAGA
TTCTTTGGCACCCACAAAGATTTATCTGGAATTTCTGATGCCGAGATTAACTTTTTCAACAAAGAGACAC
AGAGGCTTTTATGGAAAAATAACATGACTTTTCCCAAGGCAGATGCCAAACTTAAATCCCTTGGCCTTAT
GGGCCATGCCAAAAAAAGCAATGTCCCTCAAGAGAATGACGCAGAAAAACCTCTAGATGGTGCTCAGACA
AATGAAGATGTTGATATTCCTGGACCATTAGAAACTGAAGATGTTCGTCCCACGAAAAAGGCAAAATCTG
ACGAGACTTCTAAACTTGGAGACATTATTGATGGGGTGATGAATGTGGACGATGAAACGGAAAAGACCGG
GCATTCTACTTCAAAAGCCAAGATAGAGGATGAGGAGGATAGCATCAAAGTTGTTGAAACCGACGGGAGC
CTAAAATCGCACCCTCGCGAAAAGAAAAAGCTTATTGATTTTAGGGATAAGTTGTACCTTGCACCCCTAA
CAACTGTGGGCAATCTTCCCTTCAGAAGACTTTGCAAAGTTTTGGGAGCTGATGTGACTTGTGGTGAGAT
GGCCATGTGTACAAATCTTTTGCAGGGCCAAGCTTCCGAATGGGCTCTGCTTAGAAGGCATTCATCGGAA
GATCTGTTTGGTGTTCAGATTTGCGGTTCTTTTCCAGACACGGTGTCTCGTGCGGTTGAGCTTATAGATC
GAGAATGCACGGTTGATTTCATAGACATCAACATGGGCTGCCCGATAGATATGGTTGTGAACAAAAGTGC
TGGTTCAGCTCTTCTCAACAAACCATTACGAATGAAGAACATCGTGGAGGTCTCTTCTTCCATTGTTGAA
ACACCTATCACTATCAAGGTACGAACTGCATTTTTTGAGGGTAAGAACCGGATAGACTCGTTAATTTCAG
ATATTGGGGATTGGGGAGCCACTGCAGTGACGATTCATGGGCGGTCAAGACAACAACGTTATAGCAAGTC
TGCGGATTGGGACTATATATACAAGTGTACCAAAAACGCTTCCTCTAACCTACAAGTTATAGGAAATGGA
GATGTGTACTCGTTTTTAGACTGGAACAAACACAAGTCTGACTGTCCTGAGTTGTCTAGCTGCATGATTG
CTCGCGGAGCACTGATCAAGCCTTGGATATTTACTGAAATTAAAGAGCAACGGCACTGGGACATTACCTC
CGGGGAAAGACTCAACATCTTCAAGGACTTTGTACGTTTTGGTCTTCAACATTGGGGATCCGACACAAAA
GGAGTTGAGACAACTAGGCATTTCTTACTGGAGTGGCTAAGCTACACGTTTAGGTACATACCTGTAGGTC
TGCTGGATGTGATCCCGCAGCAAATCAACTGGCGTCCGCCTTCTTACTTTGGTCGTGATGATCTCGAGAC
TCTCATGATGTCTGAATCTGCGGGTGACTGGGTGAGGATATCGGAATTGCTGCTTGGAAAGGTTCCGGAA
GGCTTCACGTTTGCCCCCAAACACAAATCCAACGCTTATGATCGAGCTGAAAATGGCTAA