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Detail for ZS11_C02G56450.t1

Genome:
ZS11: ZS11_C02G56450.t1
ZS11_v0: BnaC02T0462600ZS
WE: WE_C02G61250.t1
WE_v0: BnaC07T0298700WE
Darmor: C02p54130.1_BnaDAR
BH: BnaC02T342100BH
Quinta: BnaC02T0435700QU
ZS2: BnaC02T452800ZS2
SW: BnaA06T373200SW
Express61: C02p034490.1_BnaEXP
Xiaoyun: BnaC02G0467900XY
P202: BnaC02G036540P202.1
BL: BnaC02T342100BH
TA: BnaC02T465500TA
Da-Ae: Not available
RB: BnaC02T347600RB
No2127: BnaC02T0414500NO
P130: BnaC02G059120P130.1
Length: 276
KOG ID: KOG3049
KOG E-value: Not available
KOG Score: 518.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0006099(tricarboxylic acid cycle)
Cellular Component: -
Molecular Function: GO:0016491(oxidoreductase activity),GO:0051536(iron-sulfur cluster binding),GO:0009055(electron transfer activity)
KEGG Ortholog: K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]
NR Protein: XP_013670878.1
NR E-value: 2.600000e-155
NR Score: 553.1
NR Annotation: XP_013670878.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like [Brassica napus]
SwissProt Protein: Q8LBZ7|SDHB1_ARATH
SwissProt E-value: Not available
SwissProt Score: 518.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-1 PE=1 SV=2
CDS Sequence (842 bp)
ATGGCCTCCGGTTTAATCGGAAGATTCGTTAGAACCAATCCGTCGCGATTAACCACCGCGGCGAGGCTAA
TCCCGTCGCGATGCACAGCTTCCTCAACGGATAACGGCGGCGGCGGCGGCGGCAAAGCATCGAACCTGAA
GACGTTCCAGATCTACCGATGGAACCCCGACAACCCCAGCAAGCCCGAGCTCCAAGACTACCAGATCGAC
CTCAAGGACTGTGGCCCGATGGTCCTCGACGCCCTAATCAAGATCAAGAACGAGATGGATCCCTCCCTCA
CCTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGGGTGCAACGGGCT
CGCGTGCTTGACGAAGATCGAGGAGGGATCCAAGGAGACGACGATCACTCCCTTGCCGCATATGTTCGTG
ATCAAGGATCTGGTGGTGGACATGACGAATTTTTATAATCAGTATAAGAGTATCGAGCCGTGGCTGAAGA
GGAAGAGTCCGGCGTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAAGGATAGGGCGAAGCTTGATGG
GATGTATGAGTGTATTCTTTGTGCTTGTTGTAGCACGTCGTGTCCTAGTTATTGGTGGAACCCCGAGTCT
TATCTTGGCCCTGCTGCTTTGCTACATGCCAACAGGTGGATAAGCGACAGTCGTGATGAGTACACTAAGG
AGAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATACAATCTTGAACTGCGCCCGTGC
CTGTCCAAAGGGTTTGAACCCAGGCAAACAGATCGCGCATATCAAGCAACTTCAGCGCTGA
Upstream Sequence
AATTAATATTGCCAATTTTGGTTTTAATATTAATAATTAATATTCAACCATTTCAATCTTCATCGTTTTA
TTTCGCTCCGTGAAAATGGCCTCCGGTTTAATCGGAAGATTCGTTAGAACCAATCCGTCGCGATTAACCA
CCGCGGCGAGGCTAATCCCGTCGCGATGCACAGCTTCCTCAACGGATAACGGCGGCGGCGGCGGCGGCAA
AGCATCGAACCTGAAGACGTTCCAGATCTACCGATGGAACCCCGACAACCCCAGCAAGCCCGAGCTCCAA
GACTACCAGATCGACCTCAAGGACTGTGGCCCGATGGTCCTCGACGCCCTAATCAAGATCAAGAACGAGA
TGGATCCCTCCCTCACCTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGA
CGGGTGCAACGGGCTCGCGTGCTTGACGAAGATCGAGGAGGGATCCAAGGAGACGACGATCACTCCCTTG
CCGCATATGTTCGTGATCAAGGATCTGGTGGTGGACATGACGAATTTTTATAATCAGTATAAGAGTATCG
AGCCGTGGCTGAAGAGGAAGAGTCCGGCGTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAAGGATAG
GGCGAAGCTTGATGGGATGTATGAGTGTATTCTTTGTGCTTGTTGTAGCACGTCGTGTCCTAGTTATTGG
TGGAACCCCGAGTCTTATCTTGGCCCTGCTGCTTTGCTACATGCCAACAGGTGGATAAGCGACAGTCGTG
ATGAGTACACTAAGGAGAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATACAATCTT
GAACTGCGCCCGTGCCTGTCCAAAGGGTTTGAACCCAGGCAAACAGATCGCGCATATCAAGCAACTTCAG
CGCTGAACAGCTTTTTGAAGTATTGTGCGGTCACTGAAGCTAATAATCTTCACAACGTCTTGGATTTTCA
ATTAATTTTTGTATTGTTGTTGCCAGATATTTGCACCTGAAAGAAACTCTTTTGGCAACTCTTCCCAAGT
AGATGAGCTTTGTGGTTGTATCTTGCTGAAAAATCTCTTTGAGTAATAAAACTGAAGAAAACTTAAACCT
CA
Downstream Sequence
GGTAAAGATATGAGATTGGTAGTGTTGATGGCTTGTGAATAATGGATTTAGAAGTTGTGG
TAATGGGTTGCATGTTGTAGGAGTTAGGAACCTGCTTTGAGAATTTGAATGGATGGTTGG
GAAGATTCGTGTATATATATCTTGTTGTTAGCTGCATTGATTCGAGTTGTGTAGTGGTGC
TTGAATTAGTGTTTCCAATCTATCTAGTTGTAGAAACAGTATGTTCAGTGTTTTGGTTTG
GGAAGTTGTTTTTGATTGCGTTAGTAGATAAAGTTTTGATCTTTCGATGTGTTTTAACAC
TATTCAAGTTGGCCTTTTATGAGAATAGGCTGCATAATGTAGGACTAGGAACCTGTTTTC
AGAATTTGTATGGATGGTTGAGAGTTCGTGTATACAACATATCTTGTTGTTAGCTGCATT
GATTCGACTTGTGTTGTGTGGTTCTTCACTTCTGTTTTGCTGCTTGAATTAGTGTTTCCA
ATCTAATTGTAGAAACAATATGTTCAATGTTTTGGTTTGGTAAGCTGTTTTTAGTccagc
caGTAGATAAAGTTTTGATCTTTCAATTGGAATATTCGTGTATGCATATCTTGTTGTTAG
GCGCATTGACTCGGCTTGTGTGGTTCTTCATTTCTATTTTGCTGCTTGAATTAGTGTTTC
CAATCGGATTGTGGAAACAGTATGTTCAATGTTTTGTTTTGGGAAGCTAATTATAACCGA
GATAGTAGATAAAGTTTTGATCTTTTGATGTGTGTTTTAACAAAATACTTGTTTTCATAT
GTGCAGGTGGATAAGCGACAGTCGTGATGAGTACACTAAGGAGAGACTTGAGGCTATTGA
CGACGAGTTCAAGCTTTACCGTTGCCATACAATCTTGAACTGCGCCCGTGCCTGTCCAAA
GGGTTTGAACCCAGGCAAACAGATCGCGCATATCAAGCAACTTCAGCGCTGAACAGCTTT
TTGAAGTATTGTGCGGTCACTGAAGCTAATAATCTTCACAACGTCTTGGATTTTCAATTA
ATTTTTGTATTGTTGTTGCCAGATATTTGCACCTGAAAGAAACTCTTTTGGCAACTCTTC
CCAAGTAGATGAGCTTTGTGGTTGTATCTTGCTGAAAAATCTCTTTGAGTAATAAAACTG
AAGAAAACTTAAACCTCATCTACTCTTTTGTGTTCCATCTGCATTGTCTTTTTATACTTG
TGTCTACATATGAACTCAACGTGATAGATTAACATAGCTTAGCCATAGAAAACATATTAC
TTCCTTGGCATATGGTTGACTGCGTAAGTATAACCCCAAGTACTGGCACAAACAAGAAAG
ATTGGACTAACAGCACTAGTTCTGTTCTTTGTCTCTTTGTTCATTATTGGCACGGCAACT
GATATTTCTCTAGCAACCAAACAGTTTTAGTTCTTTACGATTTCTCAGAAACACGACAAG
TCTCAGTTTCTTACTGTGGAAGGTACATAAGCTACATGTGTTTTTTTGTAATTGCTTCTT
CTGGTAGTGATGTCTTGAGATTTTGCATGGTTTTAAGCATCATTTCCATACTCATTTAGA
TCATTTAGGATATATTTAGAGTCTAATTAGGTACATAGCATATGCATGTATGGTATTTTA
GGTTTGGAAAAGCTCAAGTTGAAGTATGGAGAGTTTGATGGGAAATCATGAAGAAGGTGC
AAAACATGCTTCTACCGTGGACGCATTCCGCGGACCAATCATGTCCGCGGATTATGGGCA
GTGAAGACAATTGAAGCTGGACGAACCGCGGGTCATGGCTGTGGGTGAGTGCAGTCCGCG
GAATCGTGGCCGAGAGGTTGATTTGGTGTGGACGAACTGTGGGTCACGGACGCGGGTTGA
GGTCGTCCGCGGGATTGGACGAAGATGGAGCGCGGACGTCGACTACGGACGAGCATGGTC
CGCGGAAACAAGCCAGAGAGATTGAGTTTTGATGGGACAGACCGCGGACCACGGCCGAGG
GTTGGAGCCGTCTGCGGTCA
Pro Sequence
MASGLIGRFVRTNPSRLTTAARLIPSRCTASSTDNGGGGGGKASNLKTFQ
IYRWNPDNPSKPELQDYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCR
EGICGSCAMNIDGCNGLACLTKIEEGSKETTITPLPHMFVIKDLVVDMTN
FYNQYKSIEPWLKRKSPASEPGKEILQSKKDRAKLDGMYECILCACCSTS
CPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT
ILNCARACPKGLNPGKQIAHIKQLQR
mRNA Sequence
AATTAATATTGCCAATTTTGGTTTTAATATTAATAATTAATATTCAACCATTTCAATCTTCATCGTTTTA
TTTCGCTCCGTGAAAATGGCCTCCGGTTTAATCGGAAGATTCGTTAGAACCAATCCGTCGCGATTAACCA
CCGCGGCGAGGCTAATCCCGTCGCGATGCACAGCTTCCTCAACGGATAACGGCGGCGGCGGCGGCGGCAA
AGCATCGAACCTGAAGACGTTCCAGATCTACCGATGGAACCCCGACAACCCCAGCAAGCCCGAGCTCCAA
GACTACCAGATCGACCTCAAGGACTGTGGCCCGATGGTCCTCGACGCCCTAATCAAGATCAAGAACGAGA
TGGATCCCTCCCTCACCTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGA
CGGGTGCAACGGGCTCGCGTGCTTGACGAAGATCGAGGAGGGATCCAAGGAGACGACGATCACTCCCTTG
CCGCATATGTTCGTGATCAAGGATCTGGTGGTGGACATGACGAATTTTTATAATCAGTATAAGAGTATCG
AGCCGTGGCTGAAGAGGAAGAGTCCGGCGTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAAGGATAG
GGCGAAGCTTGATGGGATGTATGAGTGTATTCTTTGTGCTTGTTGTAGCACGTCGTGTCCTAGTTATTGG
TGGAACCCCGAGTCTTATCTTGGCCCTGCTGCTTTGCTACATGCCAACAGGTGGATAAGCGACAGTCGTG
ATGAGTACACTAAGGAGAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATACAATCTT
GAACTGCGCCCGTGCCTGTCCAAAGGGTTTGAACCCAGGCAAACAGATCGCGCATATCAAGCAACTTCAG
CGCTGAACAGCTTTTTGAAGTATTGTGCGGTCACTGAAGCTAATAATCTTCACAACGTCTTGGATTTTCA
ATTAATTTTTGTATTGTTGTTGCCAGATATTTGCACCTGAAAGAAACTCTTTTGGCAACTCTTCCCAAGT
AGATGAGCTTTGTGGTTGTATCTTGCTGAAAAATCTCTTTGAGTAATAAAACTGAAGAAAACTTAAACCT
CA