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Detail for ZS11_C02G66380.t1

Genome:
ZS11: ZS11_C02G66380.t1
ZS11_v0: BnaC02T0547000ZS
WE: WE_C02G71520.t1
WE_v0: BnaA02T0402700WE
Darmor: C02p63860.1_BnaDAR
BH: BnaA02T494000BH
Quinta: BnaC02T0510000QU
ZS2: BnaC02T536000ZS2
SW: BnaA02T440600SW
Express61: C02p042100.1_BnaEXP
Xiaoyun: BnaC02G0552000XY
P202: BnaA02G032930P202.2
BL: BnaA02T494000BH
TA: BnaC02T545600TA
Da-Ae: Not available
RB: BnaC02T432200RB
No2127: BnaA02T0402500NO
P130: BnaC02G068170P130.1
Length: 306
KOG ID: KOG3049
KOG E-value: 9.030000e-111
KOG Score: 323.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0006099(tricarboxylic acid cycle)
Cellular Component: -
Molecular Function: GO:0016491(oxidoreductase activity),GO:0051536(iron-sulfur cluster binding),GO:0009055(electron transfer activity)
KEGG Ortholog: K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]
NR Protein: CDY33981.1
NR E-value: 5.700000e-180
NR Score: 635.2
NR Annotation: CDY33981.1 BnaC02g43560D [Brassica napus]
SwissProt Protein: Q9FJP9|SDHB3_ARATH
SwissProt E-value: Not available
SwissProt Score: 562.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-3 PE=1 SV=1
CDS Sequence (934 bp)
ATGTTGCGGTTGCCGCAGCGGAGAATCTGCAGCCAAGCGGTGGAGAAAATACGTTTGAGCAGCAGTTTAA
GTGGTAACGGAGATTTTCCCATCTTAAAAGGTCACAAAGCGGCTCAGGACTTGTCCAAAGATACTCTAAA
GTCCCATGAAACAATCAAAGACAAAGAAGGTCAACACAAAGTGACCAAGAAGGAGTTCAAGATTTACAGA
TGGAACCCTGATAAGCCAAATACTAAACCCTTTCTTCAATCATTTTTCGTTGATGTTTCCACTTGTGGCC
CCATGGTTTTGGACGTCTTACAGAAGATAAAAGCAGAGGAAGATCCGAGTTTGAGTTACAGAAGATCATG
CAGAGAAGGAATATGTGGATCTTGTTCGATGAACATCGACGGTACTAATACTGTTGCATGTCTTAAACCT
ACAAACTCCGACACGTCGAAGCCAACCATAATCACTCCTTTACCACATATGTACGTCATCAAAGATTTAG
TCATCGACCTCACTAATTTTTACCAGCAATACAAATCAGTCGAGCCATGGTTAAAGACGAGGAAGCCGCC
TAAAGACGGACGCGAACACCTTCAATCACCAAACGACCGTAAGAAACTAGACGGGTTGTACGAATGCATA
CTATGTGCATGTTGTACCACGTCATGTCCTTCTTATTGGTGGAATCCTGAGGAGTTTCCAGGTCCTGCGG
CTTTACTACAGGCTTACCGCTGGATCAGTGACAGCCGCGATGAGTTTAGAGAAGAGAGGTTACAAGCAAT
AACAGAGGATGAAAGGAAAGTGTATAGATGCAGAGCAATCAAAAATTGTACGGCCACTTGTCCTAAAGGA
CTTAACCCAGCTAGTGCCATCTTGAAGATGAAGGCTAAGCATTCGCTCCCAGATCCGGTCAAGAGAATTG
AGAGAGCCTAG
Upstream Sequence
CTTTTTTGAGTGAATGAATGTAACGGGTTTTATCGTAGAAAGCTTGGCCTTTATATGGGCCTTACAAGTA
GATGATGTAATCAAAGATTCACTTCGAACACGTTGTCGTCGCACACGTGCCCTGAGGTACATCCTCAACA
CTGTCTACGTGTAAGTGAAACGAAGAAGCGAGCAGAGATGTTGCGGTTGCCGCAGCGGAGAATCTGCAGC
CAAGCGGTGGAGAAAATACGTTTGAGCAGCAGTTTAAGTGGTAACGGAGATTTTCCCATCTTAAAAGGTC
ACAAAGCGGCTCAGGACTTGTCCAAAGATACTCTAAAGTCCCATGAAACAATCAAAGACAAAGAAGGTCA
ACACAAAGTGACCAAGAAGGAGTTCAAGATTTACAGATGGAACCCTGATAAGCCAAATACTAAACCCTTT
CTTCAATCATTTTTCGTTGATGTTTCCACTTGTGGCCCCATGGTTTTGGACGTCTTACAGAAGATAAAAG
CAGAGGAAGATCCGAGTTTGAGTTACAGAAGATCATGCAGAGAAGGAATATGTGGATCTTGTTCGATGAA
CATCGACGGTACTAATACTGTTGCATGTCTTAAACCTACAAACTCCGACACGTCGAAGCCAACCATAATC
ACTCCTTTACCACATATGTACGTCATCAAAGATTTAGTCATCGACCTCACTAATTTTTACCAGCAATACA
AATCAGTCGAGCCATGGTTAAAGACGAGGAAGCCGCCTAAAGACGGACGCGAACACCTTCAATCACCAAA
CGACCGTAAGAAACTAGACGGGTTGTACGAATGCATACTATGTGCATGTTGTACCACGTCATGTCCTTCT
TATTGGTGGAATCCTGAGGAGTTTCCAGGTCCTGCGGCTTTACTACAGGCTTACCGCTGGATCAGTGACA
GCCGCGATGAGTTTAGAGAAGAGAGGTTACAAGCAATAACAGAGGATGAAAGGAAAGTGTATAGATGCAG
AGCAATCAAAAATTGTACGGCCACTTGTCCTAAAGGACTTAACCCAGCTAGTGCCATCTTGAAGATGAAG
GCTAAGCATTCGCTCCCAGATCCGGTCAAGAGAATTGAGAGAGCCTAGCCATACCATTACTCGGTCCTGT
CCGGTTATTATGTAATAAAAAGCTTTTATATCTGGCTATAAGTGTGTTTCTGGACTATTTTCTATTTATA
TAACTTTATCAGAACACGCTGTGTTTACATCGAAGGAAATATAATATATCTACGTGC
Downstream Sequence
GGTATGAATAAACTGATAATTATTTTAAATCaaattattttttttttgggtcaaaagtta
aatcaaattataaaaaaattttaagacgcaatgttgttttatagaattatatatatatat
atatatatataaTCCAATGATAACAGGTCAACACAAAGTGACCAAGAAGGAGTTCAAGAT
TTACAGATGGAACCCTGATAAGCCAAATACTAAACCCTTTCTTCAATCATTTTTCGTTGA
TGTTTCCACTTGTGGCCCCATGGTACTTTACTACAGTTATTGATTACTAATTAGTTCCAT
AGGATTACTTTGAATTCTGGAGGGCTTCGGTTCTTGGATAACGAGGTGTGTTTCGTTAAG
GTTTTGGACGTCTTACAGAAGATAAAAGCAGAGGAAGATCCGAGTTTGAGTTACAGAAGA
TCATGCAGAGAAGGAATATGTGGATCTTGTTCGATGAACATCGACGGTACTAATACTGTT
GCATGTCTTAAACCTACAAACTCCGACACGTCGAAGCCAACCATAATCACTCCTTTACCA
CATATGTACGTCATCAAAGATTTAGTCATCGACCTCACTAATTTTTACCAGCAATACAAG
TAAGTAAACCTCCCTTCTTTATATCCCTTATTGGTTTCTCGGTGCTTCCATATTTCTGGC
CTGTGTTGGTAATATTGGTTATATATTTTGACCTAAATATTGAAAGATAAACCACAAAAT
GATAGAACTATCCGTGTATTTTAAATGAAACTCTATACACTTTTATCCTCTACGTGACAC
TTCATGCATGTTATTGTGTTGTACATGTTTAGATCAGTCGAGCCATGGTTAAAGACGAGG
AAGCCGCCTAAAGACGGACGCGAACACCTTCAATCACCAAACGACCGTAAGAAACTAGAC
GGGTTGTACGAATGCATACTATGTGCATGTTGTACCACGTCATGTCCTTCTTATTGGTGG
AATCCTGAGGAGTTTCCAGGTCCTGCGGCTTTACTACAGGCTTACCGCTGGATCAGTGAC
AGGTTAAATAAAATATTCAATACATTCACTTCAAACTAGAATAGAAAATCGAAGATTAAC
AGTCTTAATTCATACCGATCTATAACATAGGTTTATGTTGTACTTTGGTTTAACGCAGCC
GCGATGAGTTTAGAGAAGAGAGGTTACAAGCAATAACAGAGGATGAAAGGAAAGTGTATA
GATGCAGAGCAATCAAAAATTGTACGGCCACTTGTCCTAAAGGACTTAACCCAGCTAGTG
CCATCTTGAAGATGAAGGCTAAGCATTCGCTCCCAGATCCGGTCAAGAGAATTGAGAGAG
CCTAGCCATACCATTACTCGGTCCTGTCCGGTTATTATGTAATAAAAAGCTTTTATATCT
GGCTATAAGTGTGTTTCTGGACTATTTTCTATTTATATAACTTTATCAGAACACGCTGTG
TTTACATCGAAGGAAATATAATATATCTACGTGCTTTCCATAAAAAACATATAAAATGGA
TTCAATCGGTGAAAAGGACGGACTAATTATTTTCGGATAAATAGTCTTTTGAATTCACCA
CTTGGAAGAGATGAACAAAATTAGAGTTTAAGACTGATCAACAATTTTGACCAAAAAAAA
AAAAAAAAGACTGATCAACAATCAAGATATGGATGAACATCTTATAAGTTATAATCACTC
AATATCAAGCATTGTATATAACATATTTGTTTTCGTTCTTTTATTTTTTAAAAGCAGGAG
ATCTTAATCACACTCGAATTAAATATATGATCACGTCATGTTTCATTGACAACCCCACCA
GAATAAATAAATAACACACTCACATCGTGGAAACGACTCATCGATTCTCGACAGAGTCCG
AACATTGATTCCTAATGGCCGACAGCTCATATGGCGAAGTATCACGAGCCAGCCATTGCT
CCACCGTGAATTTCTCCTGAGAACAACTTCTCCTACGACTCTCACTCATCGTCACTTCAA
CGTAGTTACAATACCAACCA
Pro Sequence
MLRLPQRRICSQAVEKIRLSSSLSGNGDFPILKGHKAAQDLSKDTLKSHE
TIKDKEGQHKVTKKEFKIYRWNPDKPNTKPFLQSFFVDVSTCGPMVLDVL
QKIKAEEDPSLSYRRSCREGICGSCSMNIDGTNTVACLKPTNSDTSKPTI
ITPLPHMYVIKDLVIDLTNFYQQYKSVEPWLKTRKPPKDGREHLQSPNDR
KKLDGLYECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWISDSRDEFR
EERLQAITEDERKVYRCRAIKNCTATCPKGLNPASAILKMKAKHSLPDPV
KRIERA
mRNA Sequence
CTTTTTTGAGTGAATGAATGTAACGGGTTTTATCGTAGAAAGCTTGGCCTTTATATGGGCCTTACAAGTA
GATGATGTAATCAAAGATTCACTTCGAACACGTTGTCGTCGCACACGTGCCCTGAGGTACATCCTCAACA
CTGTCTACGTGTAAGTGAAACGAAGAAGCGAGCAGAGATGTTGCGGTTGCCGCAGCGGAGAATCTGCAGC
CAAGCGGTGGAGAAAATACGTTTGAGCAGCAGTTTAAGTGGTAACGGAGATTTTCCCATCTTAAAAGGTC
ACAAAGCGGCTCAGGACTTGTCCAAAGATACTCTAAAGTCCCATGAAACAATCAAAGACAAAGAAGGTCA
ACACAAAGTGACCAAGAAGGAGTTCAAGATTTACAGATGGAACCCTGATAAGCCAAATACTAAACCCTTT
CTTCAATCATTTTTCGTTGATGTTTCCACTTGTGGCCCCATGGTTTTGGACGTCTTACAGAAGATAAAAG
CAGAGGAAGATCCGAGTTTGAGTTACAGAAGATCATGCAGAGAAGGAATATGTGGATCTTGTTCGATGAA
CATCGACGGTACTAATACTGTTGCATGTCTTAAACCTACAAACTCCGACACGTCGAAGCCAACCATAATC
ACTCCTTTACCACATATGTACGTCATCAAAGATTTAGTCATCGACCTCACTAATTTTTACCAGCAATACA
AATCAGTCGAGCCATGGTTAAAGACGAGGAAGCCGCCTAAAGACGGACGCGAACACCTTCAATCACCAAA
CGACCGTAAGAAACTAGACGGGTTGTACGAATGCATACTATGTGCATGTTGTACCACGTCATGTCCTTCT
TATTGGTGGAATCCTGAGGAGTTTCCAGGTCCTGCGGCTTTACTACAGGCTTACCGCTGGATCAGTGACA
GCCGCGATGAGTTTAGAGAAGAGAGGTTACAAGCAATAACAGAGGATGAAAGGAAAGTGTATAGATGCAG
AGCAATCAAAAATTGTACGGCCACTTGTCCTAAAGGACTTAACCCAGCTAGTGCCATCTTGAAGATGAAG
GCTAAGCATTCGCTCCCAGATCCGGTCAAGAGAATTGAGAGAGCCTAGCCATACCATTACTCGGTCCTGT
CCGGTTATTATGTAATAAAAAGCTTTTATATCTGGCTATAAGTGTGTTTCTGGACTATTTTCTATTTATA
TAACTTTATCAGAACACGCTGTGTTTACATCGAAGGAAATATAATATATCTACGTGC