BrassicaPanDB

CDS Sequence (200 bp)

ATGTCGTTGGTGTGGCTAGAAGCAGCTCTACCTCTGGGGATCATCGGAGGGATGCTGTGCATCATGGGAA
ACTCTCAGTACTACATCCACAAAGCTTATCATGGCCGTCCGAAGCACATAGGCCACGATGAATGGGATGT
CGCTATGGAGAGACGCGACAAGAAAGTCGTCGAGAAAGCCGCAGCTCCTTCCTCATGA

Upstream Sequence

ATGTCGTTGGTGTGGCTAGAAGCAGCTCTACCTCTGGGGATCATCGGAGGGATGCTGTGCATCATGGGAA
ACTCTCAGTACTACATCCACAAAGCTTATCATGGCCGTCCGAAGCACATAGGCCACGATGAATGGGATGT
CGCTATGGAGAGACGCGACAAGAAAGTCGTCGAGAAAGCCGCAGCTCCTTCCTCATGA

Downstream Sequence

GTATGATTCTCTCTCGAATTAGAGCAATTCATTCATCGTTTGTGGTTTTGATGATTTCAA
ATTTGGGATTGAAACAGCCGAAGCACATAGGCCACGATGAATGGGATGTCGCTATGGAGA
GACGCGACAAGAAAGTCGTCGAGAAAGCCGCAGCTCCTTCCTCATGATCTGATCCCTCAG
GTCTGTGTTCCTCTTCCTCCAAGTGGTTATTGGATCAATCTTCTCTATGCACTAGTTTTT
GTTGCTTCACAAGCCTATAAGTGTGCCAGTGAATGTTTGTAAAGGTGTGATTAGTCGTCA
CTGAATAGCTCTTTTGTTCTTTGGGCTCTTGACAATGAAAATGGGTAAAAAGACAGACTT
TGTGGATAATAAACTACTGTATCAGTCGTATTTGGGACAAGTTGTCGTTTTGAAGCTTCA
GCGTGTTTGCTTGGTTGCCATTCTGCTGCTATATAGTTTATCATCGGCACTGTTTAGCTA
TTTGTTCTTGAAGCTTGTGAATTGTGTTTGTTTGTTATTGTCCTGTCTCTTGTCTAGGAA
TGACTACGATCATCTTTATGGTTTGGTTAGTTAGGAGCTGTGCTTATTTCTTTGTCATAG
CTGAGCTCTAGGGCAGTAGTTTTCGTTCTTCTCGACGTAGATGATCTTCCTGCTGCTTTC
TGTTTTCTCCTTTTGGCTTTCGATGTAACGGGGAGACTTTGAAGATAGTTTCTGTTATAT
TCAACCAAAGTTACAGACAGAGAACAAAAAGGACGAATATTCTACAACAATAGTTTTCCT
TTTGGGCAATCATTTTGGATGTTCTTGGAACACAATTAATACAATGCACTCTTATCTTCA
TTTCCAGATCCAGAACTAAGATCTGGCAATGATGAGACAAAGAACCTGACATTAAGAATC
TCCTGATACATCTACAGATGTCAGAGTAAATTAACATTGTTGACATGAAACTATGCATCA
TAGCACAAGAATACACAAAGCCAGGCTATTCCACGTTTTGCTCGAAACTTTTTGGCTACT
ATGTTTCTCCGATGTAGCTGCTGCATGAGAACCATAACGAGTCTTATGAAGAACAACCAG
GCGAGACAATTCTGAATGAAAATATGAATGTTGTAACATAAATTAGCTTCTGTAGTATAT
ATAGGGCCTGCTTGCAAGTCATATTCTCAAGAAAATACTTGAACCTCAAGGACACTACTA
CTAACATTTGAAGAATGGTAAACTCAAAGTTGAGAATGTGCATCATCTTCTTAAGCTGTC
AAAAGATGTTAACATTATTACAAAAGAGATAACAGCTTTACAGAAAAAGTAGTTAGAAAG
CAAACAATGCGAGTGTGTTCCAGAAACAAATCCATATCTTCCATCAAAGTTGTGATTTGA
GAGGCCAAACAATAACACTTATTTTCCTTAAATCACTCGTAGAGAATCAAGATGAATGTA
CCGTATCAACTTGCTAACCACAACTAAAAAATAATAATAATCAGAAAAAAAAAAAACACT
TTACCAGAAGACAAGTAACAGATGGATCAAAGCTGAACTCTAACAATAATGAAGATGTAC
ACAAAACCACAATCAAAAGTTTTCCTCTAAGCTGCGTATTCAGTCTCGAGCATCGGTTGT
GTACGAGTAGTTGTAGCTGTCGGTGCTCTCGTCTCTCCGACCTGAGTCATCCTAAGAGCT
TCCCCTGTCTCTCCAGCTCTCTCCATCTCCCTAATCTTGTCCTCCTTCTTGTAACTCCGA
CACCTCATGACAAGACACACCAAAAGCCCCAAGAGTATCAACCCACCCACCACTGATCCA
ACAATGATCCAAGTCTTGGCACTATCCTCAGACCTCTTCTCCTTCTTCGGAGACGGAGCA
GATGCCACAGACTTAACCACCACAGAGAAATGCCCTTGCTTCACAGTCTCGCACGTGTTC
TGAACCGAGTCCTTGAAAGTGGCTTTCCCTCGCGAATCAAAACTAACGCACTTAGCGCCA
GAACCTTGCGGGATACGCTC

Pro Sequence

MSLVWLEAALPLGIIGGMLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAME
RRDKKVVEKAAAPSS

mRNA Sequence

ATGTCGTTGGTGTGGCTAGAAGCAGCTCTACCTCTGGGGATCATCGGAGGGATGCTGTGCATCATGGGAA
ACTCTCAGTACTACATCCACAAAGCTTATCATGGCCGTCCGAAGCACATAGGCCACGATGAATGGGATGT
CGCTATGGAGAGACGCGACAAGAAAGTCGTCGAGAAAGCCGCAGCTCCTTCCTCATGA

Genome:
ZS11:	ZS11_C03G41860.t1
ZS11_v0:	BnaC03T0381400ZS
WE:	WE_C03G38980.t1
WE_v0:	BnaC03T0314200WE
Darmor:	A05p40170.1_BnaDAR
BH:	BnaC03T405300BH
Quinta:	BnaC01T0367300QU
ZS2:	BnaC03T383900ZS2
SW:	BnaC03T393900SW
Express61:	Not available
Xiaoyun:	BnaC03G0383500XY
P202:	BnaC05G050560P202.1
BL:	BnaC03T405300BH
TA:	BnaC03T381200TA
Da-Ae:	rna-gnl\|WGS:JAGKQM\|BnaA01g37090D
RB:	BnaC03T406200RB
No2127:	BnaA05T0368200NO
P130:	BnaA01G039840P130.1
Length:	65
KOG ID:	-
KOG E-value:	Not available
KOG Score:	Not available
KOG Annotation:	-
Biological Process:	-
Cellular Component:	-
Molecular Function:	-
KEGG Ortholog:	K03945 NDUFA1; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1
NR Protein:	XP_013648132.1
NR E-value:	6.100000e-31
NR Score:	137.9
NR Annotation:	XP_013648132.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Brassica napus]
SwissProt Protein:	Q9C9Z5\|NDUA1_ARATH
SwissProt E-value:	2.060000e-42
SwissProt Score:	134.0
SwissProt Annotation:	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At3g08610 PE=3 SV=1

DETAIL

Detail for ZS11_C03G41860.t1

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