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Detail for ZS11_C03G57300.t1

Genome:
ZS11: ZS11_C03G57300.t1
ZS11_v0: BnaA06T0311700ZS
WE: WE_C03G55330.t1
WE_v0: BnaC03T0438800WE
Darmor: C03p59240.1_BnaDAR
BH: BnaA06T287400BH
Quinta: BnaC03T0498600QU
ZS2: BnaA06T272800ZS2
SW: BnaA06T299600SW
Express61: C03p050680.1_BnaEXP
Xiaoyun: BnaC03G0512200XY
P202: BnaC03G071120P202.1
BL: BnaA06T287400BH
TA: BnaA06T274600TA
Da-Ae: Not available
RB: BnaA06T289100RB
No2127: BnaC03T0423200NO
P130: BnaC03G049840P130.1
Length: 630
KOG ID: KOG2403
KOG E-value: Not available
KOG Score: 1164.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0006099(tricarboxylic acid cycle),GO:0022900(electron transport chain)
Cellular Component: -
Molecular Function: GO:0016627(oxidoreductase activity, acting on the CH-CH group of donors),GO:0050660(flavin adenine dinucleotide binding),GO:0016491(oxidoreductase activity)
KEGG Ortholog: K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1]
NR Protein: VDC94839.1
NR E-value: Not available
NR Score: 1275.0
NR Annotation: VDC94839.1 unnamed protein product [Brassica oleracea]
SwissProt Protein: Q9ZPX5|SDHA2_ARATH
SwissProt E-value: Not available
SwissProt Score: 1164.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH1-2 PE=1 SV=1
CDS Sequence (1920 bp)
ATGTGGCGGTTTGTGTCTCGTCGCGTTCGAGCTGCGAGGAGATCGGAATCTGATGGTGCTCTCATCAGTT
CTCAAGTCTCCACAAGATTGTTCTCTGCTCGTTCGACGACAAGAGATTATACAATCGTTGATCATAAGTA
TGACGCGGTTGTTGTAGGAGCAGGTGGTGCTGGACTTAGAGCAGCTATAGGACTATCAGAACATGGTTTT
AACACAGCTTGCATCACTAAGCTTTTTCCTACTCGTTCTCATACAGTTGCTGCTCAGGGAGGTATAAATG
CTGCATTGGGTAATATGACTGAAGATGACTGGCGATGGCATATGTATGATACCGTCAAAGGAAGTGACTG
GTTAGGTGATCAAGATGCAATTCAGTATATGTGCAGGGAAGCTCCAAAAGCTGTGATTGAGCTTGAGAAT
TACGGGTTGCCGTTTTCTCGAACAGAAGATGGAAAAATATATCAACGAGCTTTTGGTGGTCAGAGTCTCG
ACTTTGGAAAAGGTGGCCAAGCATATCGTTGCGCATGTGCTGCTGACCGCACTGGGCATGCTTTGTTACA
CACTCTTTATGGCCAAGCGATGAAACATAACACTCAATTCTTTGTTGAATACTTTGCCCTTGATTTGATT
ATGAACAGTGATGCAGGAACATGTCAGGGAGTCATTGCACTGAACATGGAAGATGGCACTTTACATCGTT
TCCACGCTGGCTCTACGATCTTAGCCACTGGGGGGTATGGGAGAGCTTATTTCTCAGCAACCTCAGCACA
TACATGCACAGGGGATGGAAATGCCATGGTGGCACGTGCCGGGCTTCCGCTACAGGACTTGGAGTTTGTT
CAGTTTCATCCTACTGGTATCTATGGAGCTGGATGTCTCATTACTGAAGGAGCTCGAGGCGAAGGTGGGA
TTCTCAGAAACAGTGAAGGGGAGAAATTCATGGACCGGTATGCTCCAACAGCTAGAGATCTTGCTTCAAG
AGATGTTGTCTCAAGATCTATGACTATGGAGATCCGGGAAGGGCGTGGTGCAGGACCTATGAAGGATCAT
ATTTACCTTCACCTAAACCATCTACCACCAGATGTTCTTAAGGAGAGGCTTCCTGGTATATCTGAAACTG
CTGCTATTTTCGCGGGTGTCGATGTTACAAGAGAGCCTATTCCTGTGTTGCCTACTGTGCATTACAATAT
GGGTGGCATTCCCACCAACTACCATGGAGAGGTGATTACTGGTGATGATCCAGATTCTATAGTTCCTGGA
CTAATGGCTGCAGGAGAAGCAGCATCTGCATCTGTCCATGGCGCCAATAGGCTTGGTGCAAACTCACTTC
TTGACATTGTTGTTTTTGGCCGAGCTTGTGCAAACAGAGTTGCAGAGATTCAAAAACCAGGCGAGAAACT
GAGACCTTTAGAGAACGATGCTGGTGAGAAGAGTATTGAATGGTTGCACCGACTAAGGAACTCAAATGGG
TCGCTTCCAACTTCTAAAATCAGATTGAACATGCAAAGAGTCATGCAAAACAATGCTGCTGTCTTCCGTA
CACAAGAAACACTAGAGGAAGGTTGTGATTTGATCGATAAGACTTGGGACAGTTTTGGTGATGTCAAAGT
GAAGGATAAGAGTTTGATATGGAACGCGGATTTGGTAGAAAGTATGGAGCTGGGGAATCTTTGGATTAAG
GCGTGTATAACAATGCATTCTGCTGAGGCTAGAAAGGAGAGTCGTGGAGCACATGCTCGTGAGGATTTCA
CGAAACGAGATGATGAGAATTGGATGAAGCACACACTGGGGTATTGGGAAGAAGGGAAGGTGAAACTGGA
GTATAGACCCGTCCACATGAACACATTGGACGATGAGGTTGACACTTTCCCTCCTAAAGCTCGAGTATAT
TGA
Upstream Sequence
ATGTGGCGGTTTGTGTCTCGTCGCGTTCGAGCTGCGAGGAGATCGGAATCTGATGGTGCTCTCATCAGTT
CTCAAGTCTCCACAAGATTGTTCTCTGCTCGTTCGACGACAAGAGATTATACAATCGTTGATCATAAGTA
TGACGCGGTTGTTGTAGGAGCAGGTGGTGCTGGACTTAGAGCAGCTATAGGACTATCAGAACATGGTTTT
AACACAGCTTGCATCACTAAGCTTTTTCCTACTCGTTCTCATACAGTTGCTGCTCAGGGAGGTATAAATG
CTGCATTGGGTAATATGACTGAAGATGACTGGCGATGGCATATGTATGATACCGTCAAAGGAAGTGACTG
GTTAGGTGATCAAGATGCAATTCAGTATATGTGCAGGGAAGCTCCAAAAGCTGTGATTGAGCTTGAGAAT
TACGGGTTGCCGTTTTCTCGAACAGAAGATGGAAAAATATATCAACGAGCTTTTGGTGGTCAGAGTCTCG
ACTTTGGAAAAGGTGGCCAAGCATATCGTTGCGCATGTGCTGCTGACCGCACTGGGCATGCTTTGTTACA
CACTCTTTATGGCCAAGCGATGAAACATAACACTCAATTCTTTGTTGAATACTTTGCCCTTGATTTGATT
ATGAACAGTGATGCAGGAACATGTCAGGGAGTCATTGCACTGAACATGGAAGATGGCACTTTACATCGTT
TCCACGCTGGCTCTACGATCTTAGCCACTGGGGGGTATGGGAGAGCTTATTTCTCAGCAACCTCAGCACA
TACATGCACAGGGGATGGAAATGCCATGGTGGCACGTGCCGGGCTTCCGCTACAGGACTTGGAGTTTGTT
CAGTTTCATCCTACTGGTATCTATGGAGCTGGATGTCTCATTACTGAAGGAGCTCGAGGCGAAGGTGGGA
TTCTCAGAAACAGTGAAGGGGAGAAATTCATGGACCGGTATGCTCCAACAGCTAGAGATCTTGCTTCAAG
AGATGTTGTCTCAAGATCTATGACTATGGAGATCCGGGAAGGGCGTGGTGCAGGACCTATGAAGGATCAT
ATTTACCTTCACCTAAACCATCTACCACCAGATGTTCTTAAGGAGAGGCTTCCTGGTATATCTGAAACTG
CTGCTATTTTCGCGGGTGTCGATGTTACAAGAGAGCCTATTCCTGTGTTGCCTACTGTGCATTACAATAT
GGGTGGCATTCCCACCAACTACCATGGAGAGGTGATTACTGGTGATGATCCAGATTCTATAGTTCCTGGA
CTAATGGCTGCAGGAGAAGCAGCATCTGCATCTGTCCATGGCGCCAATAGGCTTGGTGCAAACTCACTTC
TTGACATTGTTGTTTTTGGCCGAGCTTGTGCAAACAGAGTTGCAGAGATTCAAAAACCAGGCGAGAAACT
GAGACCTTTAGAGAACGATGCTGGTGAGAAGAGTATTGAATGGTTGCACCGACTAAGGAACTCAAATGGG
TCGCTTCCAACTTCTAAAATCAGATTGAACATGCAAAGAGTCATGCAAAACAATGCTGCTGTCTTCCGTA
CACAAGAAACACTAGAGGAAGGTTGTGATTTGATCGATAAGACTTGGGACAGTTTTGGTGATGTCAAAGT
GAAGGATAAGAGTTTGATATGGAACGCGGATTTGGTAGAAAGTATGGAGCTGGGGAATCTTTGGATTAAG
GCGTGTATAACAATGCATTCTGCTGAGGCTAGAAAGGAGAGTCGTGGAGCACATGCTCGTGAGGATTTCA
CGAAACGAGATGATGAGAATTGGATGAAGCACACACTGGGGTATTGGGAAGAAGGGAAGGTGAAACTGGA
GTATAGACCCGTCCACATGAACACATTGGACGATGAGGTTGACACTTTCCCTCCTAAAGCTCGAGTATAT
TGA
Downstream Sequence
GGTACGACTACATTGTTGTCTTCATACTGTTTGAATCCTCGTTCTCGTTTAGTCTTTGGG
GGGTTTCGAGCGTCTATGTGTAGACTAAACACGAATTGGTCGACCAATCTATATGATTTG
TTCGTCTTAATCCATAACTATCTACAAGTTAAATGTGTATATGTTCTTACGTGAGATATT
ATTGAGTTAAGAAAATAAATTGAATCCTTGTACATATTTGTCTATTTACTTTTAAAAGTT
GTAACATtTTGTtATTAtatattattgatttctactATTTTGTTTTGTGATTTTCAGTCA
GAATTTCCGCACAGGTTAATGTGTAAATGGTTTCGAGTTTAGAAAATGATTTGGGGAATT
TTGTGTTTTGTTTCTTGGGAAGGAATTATTTAGTTTTATACGGTTCCTTCTAATAGCTTG
GATCTTCTTAGTCTGTGAAAATATTTGTGAGATCGTATTATCCAATTCTGATTCAAAATT
GTTTGTATTCTCTGTGGCAGACGACAAGAGATTATACAATCGTTGATCATAAGTATGACG
CGGTTGTTGTAGGAGCAGGTGGTGCTGGACTTAGAGCAGCTATAGGACTATCAGAACATG
GTTTTAACACAGCTTGCATCACTAAGCTTTTTCCTACTCGTTCTCATACAGTTGCTGCTC
AGGTATCGACTACTACATTGCCTCATCTTATTTAATCTTTTGCTCCGTTGTTGATTAAGC
TATAATTTGTGCAGGGAGGTATAAATGCTGCATTGGGTAATATGACTGAAGATGACTGGC
GATGGCATATGTATGATACCGTCAAAGGAAGTGACTGGTTAGGTATGGTGCTGATCTTAG
ACTCAAAAGTCTCAAAGTTTAGACAGATTGGCTGTTAATACTTGACGATTTCTTGTTTTT
GGCATTCTTGGTCAGGCCTGGTCTTGAACGCATACTTTAGAAACATATGAATGAGGCTTT
TGATTTTCTTATAGATTTTTAGGATCCATTTTTTTTTCTATTGTTGTTATCATGGAAAAG
AAGTATAGAGAGATTATAAAGTTTAGTCAAATAAAAAAGAGAAATTGTAAAGTCCATCTC
AGAAAGATTTAGTAGTCTATAGAAGTATTAATTTTTAAACGACTTTATAGCAATTTGATG
TTTTGTATTTTTTAGAACTCATTTTATTGTATTGGATCTCCAAAATCTCAGAACCGGCAT
TGTTATTGTTTCAAGTTTCGAAAGCTAGATCTTGATTTTTCTTTTACTGTGGATGTAACA
CGTTGATTTGCAATCTAACATGTACACTAGTGAAAGCAGCTTCTTTCTTAATTCTGCTGG
TTTCTGTTTTAAGATGTAAGTAACTGGTATCTTTTGTTTTTGTATAGGTGATCAAGATGC
AATTCAGTATATGTGCAGGGAAGCTCCAAAAGCTGTGATTGAGCTTGAGAATTACGGGTT
GCCGTTTTCTCGAACAGAAGATGGAAAAATATATCAACGAGCTTTTGGTGGTCAGAGTCT
CGACTTTGGAAAAGGTTTTTGATCTTTGATTCATGCAATCTCAAGTTGGAAACTATAATT
ATTTCATGTGAAAGTTTGCTTGCTAATAGTTCCTTTTATCATTGCCCTTTATTCAGGTGG
CCAAGCATATCGTTGCGCATGTGCTGCTGACCGCACTGGGCATGCTTTGTTACACACTCT
TTATGGCCAAGCGATGAAACATAACACTCAATTCTTTGTTGAATACTTTGCCCTTGATTT
GATTATGAACAGTGATGGTAAGTACTAACTAAGAGTATTTCGTACCATAGCTGTGTTTGA
AAATCGATAGAGATCATGTTACCTTCACTATTCAAAAGATTTAGAGCTTCCCAAGTTCTG
CCTCCTTTTGGAAATTTTATATAATCAATAACTTAAAATAATATAATTCCTATTAAGAGA
TCCTCTGAAGAATGTGTTCTACAACATTCAGATGGTTTTGTTATATTTGATGAGCAGGAA
CATGTCAGGGAGTCATTGCA
Pro Sequence
MWRFVSRRVRAARRSESDGALISSQVSTRLFSARSTTRDYTIVDHKYDAV
VVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMT
EDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTED
GKIYQRAFGGQSLDFGKGGQAYRCACAADRTGHALLHTLYGQAMKHNTQF
FVEYFALDLIMNSDAGTCQGVIALNMEDGTLHRFHAGSTILATGGYGRAY
FSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGCLITEGARG
EGGILRNSEGEKFMDRYAPTARDLASRDVVSRSMTMEIREGRGAGPMKDH
IYLHLNHLPPDVLKERLPGISETAAIFAGVDVTREPIPVLPTVHYNMGGI
PTNYHGEVITGDDPDSIVPGLMAAGEAASASVHGANRLGANSLLDIVVFG
RACANRVAEIQKPGEKLRPLENDAGEKSIEWLHRLRNSNGSLPTSKIRLN
MQRVMQNNAAVFRTQETLEEGCDLIDKTWDSFGDVKVKDKSLIWNADLVE
SMELGNLWIKACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE
EGKVKLEYRPVHMNTLDDEVDTFPPKARVY
mRNA Sequence
ATGTGGCGGTTTGTGTCTCGTCGCGTTCGAGCTGCGAGGAGATCGGAATCTGATGGTGCTCTCATCAGTT
CTCAAGTCTCCACAAGATTGTTCTCTGCTCGTTCGACGACAAGAGATTATACAATCGTTGATCATAAGTA
TGACGCGGTTGTTGTAGGAGCAGGTGGTGCTGGACTTAGAGCAGCTATAGGACTATCAGAACATGGTTTT
AACACAGCTTGCATCACTAAGCTTTTTCCTACTCGTTCTCATACAGTTGCTGCTCAGGGAGGTATAAATG
CTGCATTGGGTAATATGACTGAAGATGACTGGCGATGGCATATGTATGATACCGTCAAAGGAAGTGACTG
GTTAGGTGATCAAGATGCAATTCAGTATATGTGCAGGGAAGCTCCAAAAGCTGTGATTGAGCTTGAGAAT
TACGGGTTGCCGTTTTCTCGAACAGAAGATGGAAAAATATATCAACGAGCTTTTGGTGGTCAGAGTCTCG
ACTTTGGAAAAGGTGGCCAAGCATATCGTTGCGCATGTGCTGCTGACCGCACTGGGCATGCTTTGTTACA
CACTCTTTATGGCCAAGCGATGAAACATAACACTCAATTCTTTGTTGAATACTTTGCCCTTGATTTGATT
ATGAACAGTGATGCAGGAACATGTCAGGGAGTCATTGCACTGAACATGGAAGATGGCACTTTACATCGTT
TCCACGCTGGCTCTACGATCTTAGCCACTGGGGGGTATGGGAGAGCTTATTTCTCAGCAACCTCAGCACA
TACATGCACAGGGGATGGAAATGCCATGGTGGCACGTGCCGGGCTTCCGCTACAGGACTTGGAGTTTGTT
CAGTTTCATCCTACTGGTATCTATGGAGCTGGATGTCTCATTACTGAAGGAGCTCGAGGCGAAGGTGGGA
TTCTCAGAAACAGTGAAGGGGAGAAATTCATGGACCGGTATGCTCCAACAGCTAGAGATCTTGCTTCAAG
AGATGTTGTCTCAAGATCTATGACTATGGAGATCCGGGAAGGGCGTGGTGCAGGACCTATGAAGGATCAT
ATTTACCTTCACCTAAACCATCTACCACCAGATGTTCTTAAGGAGAGGCTTCCTGGTATATCTGAAACTG
CTGCTATTTTCGCGGGTGTCGATGTTACAAGAGAGCCTATTCCTGTGTTGCCTACTGTGCATTACAATAT
GGGTGGCATTCCCACCAACTACCATGGAGAGGTGATTACTGGTGATGATCCAGATTCTATAGTTCCTGGA
CTAATGGCTGCAGGAGAAGCAGCATCTGCATCTGTCCATGGCGCCAATAGGCTTGGTGCAAACTCACTTC
TTGACATTGTTGTTTTTGGCCGAGCTTGTGCAAACAGAGTTGCAGAGATTCAAAAACCAGGCGAGAAACT
GAGACCTTTAGAGAACGATGCTGGTGAGAAGAGTATTGAATGGTTGCACCGACTAAGGAACTCAAATGGG
TCGCTTCCAACTTCTAAAATCAGATTGAACATGCAAAGAGTCATGCAAAACAATGCTGCTGTCTTCCGTA
CACAAGAAACACTAGAGGAAGGTTGTGATTTGATCGATAAGACTTGGGACAGTTTTGGTGATGTCAAAGT
GAAGGATAAGAGTTTGATATGGAACGCGGATTTGGTAGAAAGTATGGAGCTGGGGAATCTTTGGATTAAG
GCGTGTATAACAATGCATTCTGCTGAGGCTAGAAAGGAGAGTCGTGGAGCACATGCTCGTGAGGATTTCA
CGAAACGAGATGATGAGAATTGGATGAAGCACACACTGGGGTATTGGGAAGAAGGGAAGGTGAAACTGGA
GTATAGACCCGTCCACATGAACACATTGGACGATGAGGTTGACACTTTCCCTCCTAAAGCTCGAGTATAT
TGA