BrassicaPanDB

CDS Sequence (185 bp)

ATGGGTGGAGGAGGTATAACATACAAGGGGGTCACCGTACAAACTCCCAAGACGTGGCACACCGTCGCCG
GAAAGGGCTTGTGCGGTGTAATGTGGTTTTGGATTCTGTACAGAGCAAAGCAAGATGGTCCTGTAGTCAT
GGGATGGAGGCACCCGTGGGATGGTCATGGTGATCATCAATAG

Upstream Sequence

ATGGGTGGAGGAGGTATAACATACAAGGGGGTCACCGTACAAACTCCCAAGACGTGGCACACCGTCGCCG
GAAAGGGCTTGTGCGGTGTAATGTGGTTTTGGATTCTGTACAGAGCAAAGCAAGATGGTCCTGTAGTCAT
GGGATGGAGGCACCCGTGGGATGGTCATGGTGATCATCAATAG

Downstream Sequence

GTACCATTTTCTCTCCCCTACTCGACTTCAATCTTCGTTTCTCTTTTGAATCTCGATCAG
AGGCAATCGGATAGATGTTGATATCTGAATTAAAAAAAAAAAAAAAAACTGTAATCAATA
TTGACATGAAAAATTCAATGACCAGGTTTTGGATTCTGTACAGAGCAAAGCAAGATGGTC
CTGTAGTCATGGTAACACTCTCTTTGCCTTGCTGCTATTTGTAATGTTTGGAGCTTTCTT
AAGTTTAGTTGTTTTATCTCTACTCTTTCCTATGATGGGCTTAATGCGATTTTGATATTT
GACAACTCATAGGGATGGAGGCACCCGTGGGATGGTCATGGTGATCATCAATAGGTAATT
GTCTGTATTCTCACTTATGTTAGAGATTGAAAAGCATCTTCTTTTTGTTAAAACAAACGA
TCGTGGTGCATTACTAGTTTGCTAtTCGttGTTCGTTAcTGTCTATGTATCATGTTTATT
TATTTATTCTTGCTTGTCATTTTTTTTTTTTTTTTTTTAAAATGGTTTTGTAGTTAGTTT
TGAATAAAGTTGGTTGCTTTGATCCAGATTTTGTTCATACAAATGGTGAAATGTTTAAGA
GGATCTTTAACTTTTCCTTAACCATATATATAATAATATGTTTTTTTATTTTGTAGGGGA
CACACTTTGAACGTTTGGGTCTGCCTCGAGATTATGACCAGACCTTAGAGGCAAGGGATC
CAGCACGCAATTACACTTGCAGGTTTGAAACAAACGTTCGGCTTGCAACTGAGAATAAAG
ATTGCTTCCATGTTGTCACAACCCGCTGCAGGCCCTTGCCCCCACCTCCTCCTCCAGGTA
ATATGATTGCAAAAATGGTCTTATATCTTTTCTGTTTTTTTTTTTCTATGTTTCTCTCTA
TATGATATACTTTGTTGGTCATGTCTACCACAGGGGAAGATGGATTCCAATGTGGATTTG
ACACACTCTCCGTGGATGAGCTTTTCAAAGGCAACATGCCCGATTGGTTGCCTGATGACT
ATGCCACTAGTACGCTGCTGCTGCAATACTACGAGGTCATGAGCCCCTCCCTCTTTAATT
CTTCTTTTTTTTTGCTGACATTGATTGATTATTTATTCTCCAGATGAAAGAATCAGAGGT
GGAACAAGCCAAAGAATGGCTTCATCTTTACGCTGAACTAGCCTTGTACACCAAGAAGCA
GACGGACCCGGTGAGTACCCAAAACAAATGACTCTTTTTTTTTGTGTGTGTTTATACTAT
GTTATTATAAGGAATCTCTTCTTGGTGTTGTGTTACAGTTCATGTTTGAGCGTTCAAAGC
CCCTGGAGCTCGGAAAGGTTGTTGTGCAAACCAGAGGAGTTGTCGACTCTCTGAAAGAGG
TCGAGCTGTTGGATAATGCAGTCTTCTTCATAACCTTCAAAACAAGTTGCGGTGATGTCT
GGAAAGGTATCATCAGGAGGACAAGCGATGGGATTCCAGAGCATCTATCACTTGAAGCCA
AGTGCTTCATGTGATGTGAAGAGTCTCTTCTGAGGTTGACTATGAGAGAAATTATAAACG
TTTGTAGTTTTTTATCTACGCTAGCACGTATCTTTTAAGTTGATTTAAGGCCACGCTAAT
TAAAATCTTGTATTCTAATTTGGAACTTAAAATGTCTTTTTGGACATCCACAATCCAACA
TACAAACACAGAGATTTGAGAACTCTGTCGATATAAGATTTCAGACCCTAAATTTTAGAA
ATATTACATTCTATCCCAAATTTGATTTCAGTTGATAATGAAGAACCCAGTCTTCACCCA
TTTATTAAAATGGGGTCAAAAGAGCCCAAACCCAGCCTATTTAGCTTCTTATGGCGAAGA
GAAGAACGACTACGGCGAGTACCTGATCTCCGGCTAGAAAAAACCACGACCACCGCTCTT
GTTCTGTCTCAACCTAAACTAAGGCATCGTGAAACACCCGAGTCGGGCGAAAGCAAACAC
GGGTTTGGGTTATTAGGATT

Pro Sequence

MGGGGITYKGVTVQTPKTWHTVAGKGLCGVMWFWILYRAKQDGPVVMGWR
HPWDGHGDHQ

mRNA Sequence

ATGGGTGGAGGAGGTATAACATACAAGGGGGTCACCGTACAAACTCCCAAGACGTGGCACACCGTCGCCG
GAAAGGGCTTGTGCGGTGTAATGTGGTTTTGGATTCTGTACAGAGCAAAGCAAGATGGTCCTGTAGTCAT
GGGATGGAGGCACCCGTGGGATGGTCATGGTGATCATCAATAG

Genome:
ZS11:	ZS11_A02G24850.t1
ZS11_v0:	BnaA07T0244300ZS
WE:	WE_A07G29570.t1
WE_v0:	BnaA02T0219200WE
Darmor:	A07p28590.1_BnaDAR
BH:	BnaC06T452700BH
Quinta:	BnaA02T0216300QU
ZS2:	BnaC06T415300ZS2
SW:	BnaC06T447500SW
Express61:	A07p022550.1_BnaEXP
Xiaoyun:	BnaA07G0244100XY
P202:	BnaA04G013890P202.1
BL:	BnaC06T452700BH
TA:	BnaA02T211900TA
Da-Ae:	Not available
RB:	BnaA07T387200RB
No2127:	BnaA02T0218200NO
P130:	BnaA04G019120P130.1
Length:	60
KOG ID:	-
KOG E-value:	Not available
KOG Score:	Not available
KOG Annotation:	-
Biological Process:	-
Cellular Component:	GO:0005743(mitochondrial inner membrane),GO:0005747(mitochondrial respiratory chain complex I)
Molecular Function:	-
KEGG Ortholog:	-
NR Protein:	XP_009128160.1
NR E-value:	1.300000e-32
NR Score:	143.3
NR Annotation:	XP_009128160.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Brassica rapa]
SwissProt Protein:	Q8LDK3\|NDUB2_ARATH
SwissProt E-value:	4.680000e-27
SwissProt Score:	95.5
SwissProt Annotation:	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At1g76200 PE=3 SV=1

DETAIL

Detail for ZS11_A02G24850.t1

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