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DETAIL

Detail for ZS11_C05G13980.t1

Genome:
ZS11: ZS11_C05G13980.t1
ZS11_v0: BnaC05T0133500ZS
WE: WE_C05G14890.t1
WE_v0: BnaC05T0129100WE
Darmor: C05p14190.1_BnaDAR
BH: BnaC05T136900BH
Quinta: BnaC05T0095000QU
ZS2: BnaC05T129800ZS2
SW: BnaC05T134500SW
Express61: C05p012510.1_BnaEXP
Xiaoyun: BnaC05G0127400XY
P202: BnaC05G009940P202.1
BL: BnaC05T136900BH
TA: BnaC05T132500TA
Da-Ae: Not available
RB: BnaC05T136600RB
No2127: BnaC05T0125300NO
P130: BnaC05G012450P130.1
Length: 459
KOG ID: -
KOG E-value: Not available
KOG Score: Not available
KOG Annotation: -
Biological Process: GO:0009773(photosynthetic electron transport in photosystem I)
Cellular Component: GO:0009507(chloroplast),GO:0010598(NAD(P)H dehydrogenase complex (plastoquinone))
Molecular Function: -
KEGG Ortholog: -
NR Protein: XP_013692133.1
NR E-value: 1.900000e-267
NR Score: 926.4
NR Annotation: XP_013692133.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Brassica napus]
SwissProt Protein: Q9S9N6|PNSB1_ARATH
SwissProt E-value: Not available
SwissProt Score: 817.0
SwissProt Annotation: Photosynthetic NDH subunit of subcomplex B 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB1 PE=2 SV=1
CDS Sequence (1399 bp)
ATGGCTTCACTTCCTCAATCACCTAAACCCATCTCTCCCTTCTTCAAAACGCCGCCGTTTCCAACCAAAC
CACTCGTCTTCCTCAACTTCCAAACCCGGCTACCCTCCAAACCCTTGGATGTATCAGTCAATCTCAAGAA
GAAGAAGAGCGCGTGGCTCGACCCCTTCGACGACGGTGAAGACCTCAATAACGAATACGGTTCACTCTTC
GTCGACGGAAAACAAGAAGAGGATGCGAGACCGCCGGATAATCCTGATAACCCATACGGGTTCTTGAAGT
TCCCAATGGGTTACACCGTCGAGCTCGCTTCTTTGCCGCTGAAAATCAGAGGAGATGTCCGACGGTGTTG
CTGCGTCGTCTCCGGTGGAGTTTACGAGAATCTACTCTTTTTCCCGACGATCCAGCTACTTAAAGACAGG
TACCCTGGTGTTCAAGTAGATGTCTTAACGACAGAGAGAGGAAAACAAACATACGAGTTAAACAAAAACG
TGAGATGGGCTAATGTGTATGATCCAGACGATCATTGGCCTGAACCTGCTGAATATACAGACATGATCGG
ACTTCTCAAAGGAAGGTACTATGATATGATTCTGTCCACGAAGCTCGCAGGGCTAGGCCACGCAGCTTTC
TTGTTCATGACAACGGCTAGAGACAGAGTTAGCTACATTTACCCGAATGTCAACTCAGCTGGAGCTGGTC
TGATGCTATCTGAAACCTTTACAGCAGAAAACACCAACCTTTCTGAATTAGGTTATAAAATGTATGACCA
GATGGAGGATTGGTTGGGAAGACCGTTTAGGAGCGTTCCAAGGACTCCTGTGCTGCCACTTAGGGTGTCG
GTTTCACGGAGATTGAAAGAGGTTGTTGCTAACAAGTACAGGGAAGCTGGAGTTGAGACAGGGAAGTTTA
TAGTGATCCATGGGATCGAATCAGATTCGAAGGCATCAATGCAGTCAAAAGGAGATAGTGATAGTTTGCT
TCCACTTACAAAATGGGCTCAGATAACAAGGGGTATAAGGGGGTTCAAGCCGGTCTATGTGATTCCACAT
GAGAAAGAGAGAGAAAACGTTGAAGAATATGTGGGTGATGATACATCTATAGTCTTCATCACAACACCAG
GACAGTTGGCTGCTCTGGTAAATGATTCTGCTGGAGTTATTGCTACAAACACAGCTGCTATTCAACTAGC
TAATGCTAGAGACAAACCAAGTATTGGGTTGTTCTCTTCAGAAGAGAAAGCGAATCTCTTTGTACCAGAC
GCAGAAGAGAGGAGTAACTGTGTCATTGTTGCTTCAAAGACTGGAAGTCTAACAGATATCGACGTAGGAT
CTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCATTGGCTCTTGTGTAA
Upstream Sequence
ATGGCTTCACTTCCTCAATCACCTAAACCCATCTCTCCCTTCTTCAAAACGCCGCCGTTTCCAACCAAAC
CACTCGTCTTCCTCAACTTCCAAACCCGGCTACCCTCCAAACCCTTGGATGTATCAGTCAATCTCAAGAA
GAAGAAGAGCGCGTGGCTCGACCCCTTCGACGACGGTGAAGACCTCAATAACGAATACGGTTCACTCTTC
GTCGACGGAAAACAAGAAGAGGATGCGAGACCGCCGGATAATCCTGATAACCCATACGGGTTCTTGAAGT
TCCCAATGGGTTACACCGTCGAGCTCGCTTCTTTGCCGCTGAAAATCAGAGGAGATGTCCGACGGTGTTG
CTGCGTCGTCTCCGGTGGAGTTTACGAGAATCTACTCTTTTTCCCGACGATCCAGCTACTTAAAGACAGG
TACCCTGGTGTTCAAGTAGATGTCTTAACGACAGAGAGAGGAAAACAAACATACGAGTTAAACAAAAACG
TGAGATGGGCTAATGTGTATGATCCAGACGATCATTGGCCTGAACCTGCTGAATATACAGACATGATCGG
ACTTCTCAAAGGAAGGTACTATGATATGATTCTGTCCACGAAGCTCGCAGGGCTAGGCCACGCAGCTTTC
TTGTTCATGACAACGGCTAGAGACAGAGTTAGCTACATTTACCCGAATGTCAACTCAGCTGGAGCTGGTC
TGATGCTATCTGAAACCTTTACAGCAGAAAACACCAACCTTTCTGAATTAGGTTATAAAATGTATGACCA
GATGGAGGATTGGTTGGGAAGACCGTTTAGGAGCGTTCCAAGGACTCCTGTGCTGCCACTTAGGGTGTCG
GTTTCACGGAGATTGAAAGAGGTTGTTGCTAACAAGTACAGGGAAGCTGGAGTTGAGACAGGGAAGTTTA
TAGTGATCCATGGGATCGAATCAGATTCGAAGGCATCAATGCAGTCAAAAGGAGATAGTGATAGTTTGCT
TCCACTTACAAAATGGGCTCAGATAACAAGGGGTATAAGGGGGTTCAAGCCGGTCTATGTGATTCCACAT
GAGAAAGAGAGAGAAAACGTTGAAGAATATGTGGGTGATGATACATCTATAGTCTTCATCACAACACCAG
GACAGTTGGCTGCTCTGGTAAATGATTCTGCTGGAGTTATTGCTACAAACACAGCTGCTATTCAACTAGC
TAATGCTAGAGACAAACCAAGTATTGGGTTGTTCTCTTCAGAAGAGAAAGCGAATCTCTTTGTACCAGAC
GCAGAAGAGAGGAGTAACTGTGTCATTGTTGCTTCAAAGACTGGAAGTCTAACAGATATCGACGTAGGAT
CTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCATTGGCTCTTGTGTAA
Downstream Sequence
GTAAAAAAAAAGTTAAAAAAATTAAAAAAAAAGTCTTTTATACTGAAAAAGCAGAACATT
GTCTGAACATTTTCAATGTTGTTTGTAAGGTACCCTGGTGTTCAAGTAGATGTCTTAACG
ACAGAGAGAGGAAAACAAACATACGAGTTAAACAAAAACGTGAGATGGGCTAATGTGTAT
GATCCAGACGATCATTGGCCTGAACCTGCTGAATATACAGACATGATCGGACTTCTCAAA
GTTTGTACCTTTTTTCAAAAAAAAACTTTTTATTGTTCTGTTTTTTAATCAGATATGTTA
AAATGAACTTTCCTTGTGTTGCAGGGAAGGTACTATGATATGATTCTGTCCACGAAGCTC
GCAGGGCTAGGCCACGCAGCTTTCTTGTTCATGACAACGGCTAGAGACAGAGTTAGCTAC
ATTTACCCGAATGTCAACTCAGCTGGAGCTGGTCTGATGCTATCTGAAACCTTTACAGCA
GAAAACACCAACCTTTCTGAATTAGGTTATAAAATGTGAGTTAGTTAGCCCCTTTCACAA
GGCAGCCAGAATGGAAAGTTTTATTGGCTGTTTTATGGTTTTCAGGTATGACCAGATGGA
GGATTGGTTGGGAAGACCGTTTAGGAGCGTTCCAAGGACTCCTGTGCTGCCACTTAGGGT
GTCGGTTTCACGGAGATTGAAAGAGGTTGTTGCTAACAAGTACAGGGAAGCTGGAGTTGA
GACAGGGAAGTTTATAGTGATCCATGGGATCGAATCAGATTCGAAGGCATCAATGCAGTC
AAAAGGAGATAGTGATAGTTTGCTTCCACTTACAAAATGGGCTCAGATAACAAGGGGTAT
AAGGTAGTAAGACAACAACCTCAGAGTTTTTTTAGTGTCTTTGCTGAGATGTTTGGTTTG
TTTCCTCTGACATAAACTACAGGGGGTTCAAGCCGGTCTATGTGATTCCACATGAGAAAG
AGAGAGAAAACGTTGAAGAATATGTGGGTGATGATACATCTATAGTCTTCATCACAACAC
CAGGACAGGTATCTCTAAGCCTTAGGCATCTGTCTGGTATCTACTGAAAAAAGGTTGAGA
AACTTTAATCTAACTTGATTCCATTTCTTGACCTTTACTTAGTTGGCTGCTCTGGTAAAT
GATTCTGCTGGAGTTATTGCTACAAACACAGCTGCTATTCAACTAGCTAATGCTAGAGAC
AAACCAAGGTGAAAATTATCTGATTAGGACAGACACTGATCAGTTATTTTTCAAGAACTG
ACATGTGTGTGTTTTATCTTCTTTTTCTTCCAGTATTGGGTTGTTCTCTTCAGAAGAGAA
AGCGAATCTCTTTGTACCAGACGCAGAAGAGAGGAGTAACTGTGTCATTGTTGCTTCAAA
GACTGGAAGTCTAACAGATATCGACGTAGGATCTGTTAAAAATGCAATGCAGGTCTTTGA
AGGATCATTGGCTCTTGTGTAAATAATCTTAAAAAGTTTGTAAAACAAGTTACATAATAT
ATATAGCATTTTATGTGTATAATAAATACATTTATTCAGCATCAAAATCAGGTTCCGGAG
GCTTTTGCAGATTCAACAACCTCTTTGAACTCTCTGTGCTCCTTAGTCTGTGACCTTTCA
ATGCATTAGCAGCAAATCTTGATGCAAATATCGTCGAACGTAGTCTAGAAGAAGACTCGG
TTCTTGTAAACACTGGAGTCCTCTCGTCCTCCTCCTCAGCATCATCATCGTCATACTCAT
CTTCATAACCCATCTCGTCTTCCTCTTCTTCGATCCTTCTCAGCTCAGCGTTTTTCCTTC
TCGAATGGCGACGCCAAGCAGCTTGGATGAAGGAAGAAGCCCAAGTTCTCCATTGCTGAG
AGTAAAACCTAAAAGTCTGTTGAACCTGTCGGCTATGAAGTCTCCTAAACTGACTTGCTA
CAAACTTGAGCTCTTCGGCTTCGAGGGCGAAAGCCTCTACTTCAGTCAGAGCCTTCACCG
TTCTTGTGGAAGAAGGTAGG
Pro Sequence
MASLPQSPKPISPFFKTPPFPTKPLVFLNFQTRLPSKPLDVSVNLKKKKS
AWLDPFDDGEDLNNEYGSLFVDGKQEEDARPPDNPDNPYGFLKFPMGYTV
ELASLPLKIRGDVRRCCCVVSGGVYENLLFFPTIQLLKDRYPGVQVDVLT
TERGKQTYELNKNVRWANVYDPDDHWPEPAEYTDMIGLLKGRYYDMILST
KLAGLGHAAFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSEL
GYKMYDQMEDWLGRPFRSVPRTPVLPLRVSVSRRLKEVVANKYREAGVET
GKFIVIHGIESDSKASMQSKGDSDSLLPLTKWAQITRGIRGFKPVYVIPH
EKERENVEEYVGDDTSIVFITTPGQLAALVNDSAGVIATNTAAIQLANAR
DKPSIGLFSSEEKANLFVPDAEERSNCVIVASKTGSLTDIDVGSVKNAMQ
VFEGSLALV
mRNA Sequence
ATGGCTTCACTTCCTCAATCACCTAAACCCATCTCTCCCTTCTTCAAAACGCCGCCGTTTCCAACCAAAC
CACTCGTCTTCCTCAACTTCCAAACCCGGCTACCCTCCAAACCCTTGGATGTATCAGTCAATCTCAAGAA
GAAGAAGAGCGCGTGGCTCGACCCCTTCGACGACGGTGAAGACCTCAATAACGAATACGGTTCACTCTTC
GTCGACGGAAAACAAGAAGAGGATGCGAGACCGCCGGATAATCCTGATAACCCATACGGGTTCTTGAAGT
TCCCAATGGGTTACACCGTCGAGCTCGCTTCTTTGCCGCTGAAAATCAGAGGAGATGTCCGACGGTGTTG
CTGCGTCGTCTCCGGTGGAGTTTACGAGAATCTACTCTTTTTCCCGACGATCCAGCTACTTAAAGACAGG
TACCCTGGTGTTCAAGTAGATGTCTTAACGACAGAGAGAGGAAAACAAACATACGAGTTAAACAAAAACG
TGAGATGGGCTAATGTGTATGATCCAGACGATCATTGGCCTGAACCTGCTGAATATACAGACATGATCGG
ACTTCTCAAAGGAAGGTACTATGATATGATTCTGTCCACGAAGCTCGCAGGGCTAGGCCACGCAGCTTTC
TTGTTCATGACAACGGCTAGAGACAGAGTTAGCTACATTTACCCGAATGTCAACTCAGCTGGAGCTGGTC
TGATGCTATCTGAAACCTTTACAGCAGAAAACACCAACCTTTCTGAATTAGGTTATAAAATGTATGACCA
GATGGAGGATTGGTTGGGAAGACCGTTTAGGAGCGTTCCAAGGACTCCTGTGCTGCCACTTAGGGTGTCG
GTTTCACGGAGATTGAAAGAGGTTGTTGCTAACAAGTACAGGGAAGCTGGAGTTGAGACAGGGAAGTTTA
TAGTGATCCATGGGATCGAATCAGATTCGAAGGCATCAATGCAGTCAAAAGGAGATAGTGATAGTTTGCT
TCCACTTACAAAATGGGCTCAGATAACAAGGGGTATAAGGGGGTTCAAGCCGGTCTATGTGATTCCACAT
GAGAAAGAGAGAGAAAACGTTGAAGAATATGTGGGTGATGATACATCTATAGTCTTCATCACAACACCAG
GACAGTTGGCTGCTCTGGTAAATGATTCTGCTGGAGTTATTGCTACAAACACAGCTGCTATTCAACTAGC
TAATGCTAGAGACAAACCAAGTATTGGGTTGTTCTCTTCAGAAGAGAAAGCGAATCTCTTTGTACCAGAC
GCAGAAGAGAGGAGTAACTGTGTCATTGTTGCTTCAAAGACTGGAAGTCTAACAGATATCGACGTAGGAT
CTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCATTGGCTCTTGTGTAA