BrassicaPanDB

CDS Sequence (200 bp)

ATGTCGTTGGTGTGGTTAGAAGCGGCTCTGCCTCTCGGAATCATCGGAGGGATGCTCTGCATTATGGGAA
ACTCGCAGTACTACATCCACAAAGCTTATCATGGCCGTCCGAAGCACATAGGGCACGATGAATGGGACGT
TGCTATGGAGAGACGCGACAAGAAAGTCGTCGAGAAAGCTTCAGCTCCTTCCTCGTGA

Upstream Sequence

ATGTCGTTGGTGTGGTTAGAAGCGGCTCTGCCTCTCGGAATCATCGGAGGGATGCTCTGCATTATGGGAA
ACTCGCAGTACTACATCCACAAAGCTTATCATGGCCGTCCGAAGCACATAGGGCACGATGAATGGGACGT
TGCTATGGAGAGACGCGACAAGAAAGTCGTCGAGAAAGCTTCAGCTCCTTCCTCGTGA

Downstream Sequence

GTATGACTTTTCTCCCCCCCCTTTCTCTTTGATTGCGTCTCTCTCTATCGCCTAGGGTTT
TTACGATTTGATCCGATTGGGATCTCGAATTTGAGTTTTGATGAATTCAAAATTGGTGAT
TGAGCAGCCGAAGCACATAGGGCACGATGAATGGGACGTTGCTATGGAGAGACGCGACAA
GAAAGTCGTCGAGAAAGCTTCAGCTCCTTCCTCGTGATTCGATTTCATTCCCTTTTGTTC
ATCAGGTCTGTTTTGATTCTCTGATTCGATCCGCTTGTGCTCTTTGTTAGTCTACTTATG
ATTTTGCTTGTCGTCTCGCATGAAATTTAGTACACAAGTTTTGTTGTTTGACAAGGTGTT
AGTGTGCCAGTGAAGTTTTTAATGTGTGGGTCACTGTAAAGCTCTTTGCTTTTTTGGGTT
CTAGATATTAGGGACAAATGTACCACATCGGTAGTTGGAAGGGATCTTTAGTAATATATA
AGATAGATAGACCACTCCACTTATCACCAATTGGTTTTAGGTTGGAAGTTCATCTACCTT
AACATGGTATCAGAGCCCGATCCACGCAGTCCAACCCGATCCACATCGATCCGGCCCCAA
GTTGGCCCTCGATCCTTGCCCAAACATTCCGAGATTGACGCTTAAATAGCCATCATCTCG
AGGGGGCGTATTAGGGACAAATGTCCCACATCGGTAGTTGGAAGGGATCTTTAGTAATAT
ATAAGATAGATAGACCACTCCACTTATCACCAATTGGTTTTAGGTTCGAAGTTCATCTAG
CTTAACACTAGATAATGTATATGCGTAGAGCTTAATAAGATAGACCTTGTGGAGATAGCT
ACTGTATCAGTCATATGTAGCACACGCAGTTGCGTTACTGCTTAGTTCTTTGTCAGTGTA
CTTGGTTGATTGCTATTCTGTATAGTAAAGTCATTCTTCGAGGGAAATGAATGATATCCT
ATGAGTGTTTTATGTGTTCATAGATTATTATCCTCGTCATTTCTGCTTAGTTCTTTGCCA
CTTGAAGTTTGTGGATGGTGGTTTTTTTTTTTTTGTATTTGTTTTGTCTATTGAGTGACG
AAGATTCTGGTTATTGGTTTTGGTTAATTGATCATCTTTTTTTTGGAGCTCTATGCAGTG
ATTTTATTTCTGTTTTCTCCTTTGGTCTTGCGATGTGTAACTGTGAGTTGCATGTTGATG
TGATGTAGGGGCTTCAGGTGAACAACTTGTGGTCACAACTCACAAATAAAGTGTATTCCA
GAAGAAGAAGAAGAAGCTGGGGAATCTGGTACTGTTATTCCCGTTTGATTTTTCTTGGAG
ACAAGTTTGGATAAAGCTTTGTTGCTTAAACACCTTTTTCTGATCTCAAATTGAGACCTT
AATGACATTTGGTTTATAACTTCTCTGTTTGTTTGGGGTACATGCTGTTAAGTTGCATGA
CATTTGGTTTACAATACACTCTTAATAATAATCTTGAAGAATGGCTCATCATAAACTTTA
CAGTACGGATAGAAAATGAGGATTACCTACCTTCTTCAGGTGTGTAATTTGTTGCGGCGG
GTAGGATCTAGAGTGTGGTTGTGTATTAGTCTATTAGATAAGGAGATATATTTGAGAGTC
CAATGAAGCTAGTGATGATGGATGACATTGGTTTTATGGCTGTAACTAATAATGGAGGAT
GATGAATGAGGTCGGTCAAAGCGTCTGTCTTTGCTTGCAGATTCACATGGGGTCCCCTTG
CTATGTCCCTTTCAAGTGGGCTCATCTCTTAACTCTGCTTCGAAATGGTCCTCTCTTGTT
ACCAAACCCTTAATTTTTTTTAATACTATGTTCAGAGGAATTTTTGTTTCATGCCATTAA
GTTGCTCTTACCAACTAAAACAGTAGAACCATAGATTACGGCAGTTTTAGAAACAGCTTC
CATGATTCTAAAGAAGAATCACTTTGCTCTTTAGTGAAAACGAAGCTTGTTTATATTTTA
CCGTTGAGACCTCACTTTTA

Pro Sequence

MSLVWLEAALPLGIIGGMLCIMGNSQYYIHKAYHGRPKHIGHDEWDVAME
RRDKKVVEKASAPSS

mRNA Sequence

ATGTCGTTGGTGTGGTTAGAAGCGGCTCTGCCTCTCGGAATCATCGGAGGGATGCTCTGCATTATGGGAA
ACTCGCAGTACTACATCCACAAAGCTTATCATGGCCGTCCGAAGCACATAGGGCACGATGAATGGGACGT
TGCTATGGAGAGACGCGACAAGAAAGTCGTCGAGAAAGCTTCAGCTCCTTCCTCGTGA

Genome:
ZS11:	ZS11_C05G59640.t1
ZS11_v0:	BnaC05T0510500ZS
WE:	WE_C05G62140.t1
WE_v0:	BnaC05T0497300WE
Darmor:	C05p59250.1_BnaDAR
BH:	BnaC05T539400BH
Quinta:	BnaC01T0367300QU
ZS2:	BnaC05T486400ZS2
SW:	BnaC03T393900SW
Express61:	Not available
Xiaoyun:	BnaC05G0518200XY
P202:	BnaC05G050560P202.1
BL:	BnaC05T539400BH
TA:	BnaC05T496500TA
Da-Ae:	rna-gnl\|WGS:JAGKQM\|BnaA01g37090D
RB:	BnaC05T536600RB
No2127:	BnaC05T0492000NO
P130:	BnaA01G039840P130.1
Length:	65
KOG ID:	-
KOG E-value:	Not available
KOG Score:	Not available
KOG Annotation:	-
Biological Process:	-
Cellular Component:	-
Molecular Function:	-
KEGG Ortholog:	K03945 NDUFA1; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1
NR Protein:	XP_009146997.1
NR E-value:	8.000000e-31
NR Score:	137.5
NR Annotation:	XP_009146997.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 [Brassica rapa]
SwissProt Protein:	Q9C9Z5\|NDUA1_ARATH
SwissProt E-value:	5.290000e-42
SwissProt Score:	133.0
SwissProt Annotation:	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 OS=Arabidopsis thaliana OX=3702 GN=At3g08610 PE=3 SV=1

DETAIL

Detail for ZS11_C05G59640.t1

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