SEARCH

DETAIL

Detail for ZS11_A02G37280.t1

Genome:
ZS11: ZS11_A02G37280.t1
ZS11_v0: BnaA02T0309200ZS
WE: WE_A02G37940.t1
WE_v0: BnaA02T0308000WE
Darmor: A02p31440.1_BnaDAR
BH: BnaA06T396500BH
Quinta: BnaA02T0300000QU
ZS2: BnaA02T324200ZS2
SW: BnaA02T347100SW
Express61: A02p030130.1_BnaEXP
Xiaoyun: BnaA02G0311100XY
P202: BnaA02G025610P202.1
BL: BnaA06T396500BH
TA: BnaA02T306200TA
Da-Ae: rna-gnl|WGS:JAGKQM|BnaA01g36910D
RB: BnaA02T293600RB
No2127: BnaC02T0372000NO
P130: BnaC02G053560P130.1
Length: 607
KOG ID: KOG4205
KOG E-value: Not available
KOG Score: 645.0
KOG Annotation: RNA processing and modification
Biological Process: -
Cellular Component: -
Molecular Function: GO:0003723(RNA binding),GO:0003676(nucleic acid binding)
KEGG Ortholog: K14411 MSI; RNA-binding protein Musashi
NR Protein: CDY28918.1
NR E-value: 2.700000e-253
NR Score: 879.8
NR Annotation: CDY28918.1 BnaA02g25580D [Brassica napus]
SwissProt Protein: Q9FGK0|NDUB8_ARATH
SwissProt E-value: 1.180000e-68
SwissProt Score: 221.0
SwissProt Annotation: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g47570 PE=2 SV=1
CDS Sequence (1850 bp)
ATGGGTAAAAGACTAAAAGGTGTGTACTACAATACAAACCAACAAAGAATTTCAATCTCCCTTCTTCTTC
CTCTTCTCCCTTTTCTTAAACTTCGGAATCCAGGATCGTGGGTCGATCGGTTCTCACAATCCGATCAAGA
CCCAGTAGTTCGTTTTCATCCTTCACTGTTTTCCAAAAGAATGGAGATGGAATCATGTAAGCTTTTCATC
GGTGGGATCTCTTGGGAGACCACTGAAGATCGTCTCCGCGAGTATTTTCAGAGTTTCGGTGAGGTTTTGG
AGGCCGTTATCATGAAGGATCGAGCCACTGGTCGTGCTCGTGGCTTTGGTTTCCTTGTTTTCTCTGACCC
CATTGTCGCTGAGCGAGTGGTCTTGCTCAGACACGTCATTGATGGTAAACTTGTTGAGGCGAAGAAGGCA
GTTCCAAGAGATGACCACCTAGTGTTGAACAAAAGTAACAACACTAGTCTCCAGGGATCACCTGGCCCAG
CAAACAGCAAGAAGATCTTTGTTGGAGGTTTGGCTTCATCGGTGACAGAAGCTGAGTTCAAAAAGTATTT
TGCTCAGTTTGGGGTGATCACTGATGTGGTGGTGATGTATGACCACAGAACCCAGCGACCGAGAGGCTTC
GGGTTCATCTCTTTTGAGTCAGAGGACGCTGTAGACAAAGTTCTGCAGAGGACATTCCACGAACTCAATG
GAAAGATGGTGGAGGTCAAACTGGCTGTTCCTAAGGAAATGGCTCTGAACCCTATCCGGAACCAAATGAA
TGTAAATAGCTTTGGTAATAGTAGAATCAGTGCATTGCTGATGAACGAGTACACCCAAGGGTTCAGCCCG
AGTCCAATCTCCGGTTATGGAGTCAAACCTGAAGTTAGGTACAGTCCAGGATTAGGTAATAGGGGTGGTG
GATTCTCACCGTTTGGACATGGATATGGAATTGAGCTGAACTTTGAGCCAGATCAGAGTCAGAACTTTGG
ATCTGGTTCCAGTGCAGGCTTTGGACGGCCCTTTAGCCCAGGATATGCCGCGAGGCTTGGCAGGTACGGT
AGCCAGATTGAGTCAGGAGGAGTTGGTAACGGTTCTGTGCTAAATGCAACAACAAAGAACCAGTTATGGG
GTAATGGTGGTGGTCTAGGTTACATGTCAAACTCACCAATATCTAGAAGCAGCTTCAATGGAATGTCTTC
ACTAGGCAGCATCGGAGACAACTGGGGACGTAATAGCTACCGCAGTGAGGGAGGAGGAGGCTTAGGATTA
GAAGCAATGAGAGGGGCTCATGTTGGTGGTTACAGCAGCGGCTCAAGCAGCTTGGAGAATGACTCTATGT
ACAGTGACTCGGCGTGGCTTTCGATGCCTGCAAAGGCGGAGGAAAGAATGGGAGCGTTTGACTTCATGTC
TAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGCGAAAATGGCAGGAAGATTGAGCGGTGTG
GCCTCACGAATCATGGGTGGAAACGGCATCGTTGCCCGATCCGCCGCCTCCTCTCTCCGCCAACGCGCCG
GCATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGACAAGCCTCTTTCGGTGAACGACGAGCTGATGTG
GGACAACGGGACTGCGTTTCCAGAGCCTTGCATAGATCGGATTGCTGACACCGTCGGGAAGTATGAAGCA
TTGGGATGGTTGTGTGGCGGTCTAAGCTTCTTTGGGGCTCTTGGTATGCTCGCTGTTTTGAACGATAAAG
CTTCAAAAGTTCCTTTTACACCGCGAGTGTATCCGTATGATAACCTGAGAGTGGAGCTTGGAGGAGAGCC
ATAG
Upstream Sequence
ATGGGTAAAAGACTAAAAGGTGTGTACTACAATACAAACCAACAAAGAATTTCAATCTCCCTTCTTCTTC
CTCTTCTCCCTTTTCTTAAACTTCGGAATCCAGGATCGTGGGTCGATCGGTTCTCACAATCCGATCAAGA
CCCAGTAGTTCGTTTTCATCCTTCACTGTTTTCCAAAAGAATGGAGATGGAATCATGTAAGCTTTTCATC
GGTGGGATCTCTTGGGAGACCACTGAAGATCGTCTCCGCGAGTATTTTCAGAGTTTCGGTGAGGTTTTGG
AGGCCGTTATCATGAAGGATCGAGCCACTGGTCGTGCTCGTGGCTTTGGTTTCCTTGTTTTCTCTGACCC
CATTGTCGCTGAGCGAGTGGTCTTGCTCAGACACGTCATTGATGGTAAACTTGTTGAGGCGAAGAAGGCA
GTTCCAAGAGATGACCACCTAGTGTTGAACAAAAGTAACAACACTAGTCTCCAGGGATCACCTGGCCCAG
CAAACAGCAAGAAGATCTTTGTTGGAGGTTTGGCTTCATCGGTGACAGAAGCTGAGTTCAAAAAGTATTT
TGCTCAGTTTGGGGTGATCACTGATGTGGTGGTGATGTATGACCACAGAACCCAGCGACCGAGAGGCTTC
GGGTTCATCTCTTTTGAGTCAGAGGACGCTGTAGACAAAGTTCTGCAGAGGACATTCCACGAACTCAATG
GAAAGATGGTGGAGGTCAAACTGGCTGTTCCTAAGGAAATGGCTCTGAACCCTATCCGGAACCAAATGAA
TGTAAATAGCTTTGGTAATAGTAGAATCAGTGCATTGCTGATGAACGAGTACACCCAAGGGTTCAGCCCG
AGTCCAATCTCCGGTTATGGAGTCAAACCTGAAGTTAGGTACAGTCCAGGATTAGGTAATAGGGGTGGTG
GATTCTCACCGTTTGGACATGGATATGGAATTGAGCTGAACTTTGAGCCAGATCAGAGTCAGAACTTTGG
ATCTGGTTCCAGTGCAGGCTTTGGACGGCCCTTTAGCCCAGGATATGCCGCGAGGCTTGGCAGGTACGGT
AGCCAGATTGAGTCAGGAGGAGTTGGTAACGGTTCTGTGCTAAATGCAACAACAAAGAACCAGTTATGGG
GTAATGGTGGTGGTCTAGGTTACATGTCAAACTCACCAATATCTAGAAGCAGCTTCAATGGAATGTCTTC
ACTAGGCAGCATCGGAGACAACTGGGGACGTAATAGCTACCGCAGTGAGGGAGGAGGAGGCTTAGGATTA
GAAGCAATGAGAGGGGCTCATGTTGGTGGTTACAGCAGCGGCTCAAGCAGCTTGGAGAATGACTCTATGT
ACAGTGACTCGGCGTGGCTTTCGATGCCTGCAAAGGCGGAGGAAAGAATGGGAGCGTTTGACTTCATGTC
TAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGCGAAAATGGCAGGAAGATTGAGCGGTGTG
GCCTCACGAATCATGGGTGGAAACGGCATCGTTGCCCGATCCGCCGCCTCCTCTCTCCGCCAACGCGCCG
GCATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGACAAGCCTCTTTCGGTGAACGACGAGCTGATGTG
GGACAACGGGACTGCGTTTCCAGAGCCTTGCATAGATCGGATTGCTGACACCGTCGGGAAGTATGAAGCA
TTGGGATGGTTGTGTGGCGGTCTAAGCTTCTTTGGGGCTCTTGGTATGCTCGCTGTTTTGAACGATAAAG
CTTCAAAAGTTCCTTTTACACCGCGAGTGTATCCGTATGATAACCTGAGAGTGGAGCTTGGAGGAGAGCC
ATAGAGGAGACCTATCAAGTGATCTACTGAATCAAAACTCAAGCAGTGTTTTCTTCACTGCTTTGTTTTT
TAAAATTTTTAAACTTCGTGCTCAGAACTTGAAGACAAAATAATAAAACAGACTTGTGTTTTCCATTATA
TTGTGATGTCTCTGTAATTATCAAAGACCATTTGGGTG
Downstream Sequence
AGTCGGTTATAAATTATTAATTCCTTGAAATTAATATTAGAGAGAGAGGAAGGAAAAGAC
Gaaagtgccatcgtctgtaagccaaacattccatataaaaccaaaacgtaagaaagagct
tctctttgccaatttttgctgtttctcttcttcctactacaaactccatccatcATCCTC
CATTTTCTTTTTGGCCATTTCCAAAATAAAAACAGTAAAATCCATTTTTATTATTGGACG
AAAATCAAAAAAAAGAAAAGAGAGAGAGAGAGAGAGAGGAGAAAAGAGGGCCTCACGCCC
TCTTATTAAAAGCTTCATCCTCTCCAATCTCTTAGATTTCAATCTCCCTTCTTCTTCCTC
TTCTCCCTTTTCTTAAACTTCGGTAACACATCAGATTCTCTCTCTCTCTTTCTTCTCTTA
TGGGTTTTTAATCTCTTCTTCAAAGTTTACACCTTTACTTGATCGACTCATCATGTGTTT
GTTTGCTTGCAGGAATCCAGGATCGTGGGTCGATCGGTTCTCACAATCCGATCAAGACCC
AGTAGTTCGTTTTCATCCTTCACTGTTTTCCAAAAGGTATGTTTGTTCGATTTTTGAATC
TCTTCATAAGCATTTTTAGTTAGATCAAGATGTGTTATATGTATACTCTCTCTTTTTGTT
GCAGAATGGAGATGGAATCATGTAAGCTTTTCATCGGTGGGATCTCTTGGGAGACCACTG
AAGATCGTCTCCGCGAGTATTTTCAGAGTTTCGGTGAGGTTTTGGAGGCCGTTATCATGA
AGGATCGAGCCACTGGTCGTGCTCGTGGCTTTGGTTTCCTTGTTTTCTCTGACCCCATTG
TCGCTGAGCGAGTGGTCTTGCTCAGACACGTCATTGATGGTAAACTTGTAAGTGTTTCCA
TACCCCTTTTGTAAACCAATACTACATTGCTTGAGTATCAATCTTTTATTAGAAGGTTGC
TGCTCCTCGAAGCAAAGCTATTCTTTTTTATTCGTATTCCTGTTTTAGACTATATCTTGT
ACATTGTCACTGTCAGCGTAACTAAGAAAGTACCAAACTCAAAAGAGAAATAACCATTTC
TCTCTGCTAATGTTGGTCAAAATGTTGATCATTTCATTGGTCTCTCTTGAACTCTCATTG
GTCTGATTGTACACAATGAGTTACAATCTGTTTTTCTTTCTCATTCGTGTGATCCTAAGT
TAGAGTGCTACATTTACTAAGCAAGGATCAATCAGCGAGTGTGAGTTTTATAGTAGTAAA
GATTTCTATTTTTCTCCATGATCACAGGTTGAGGCGAAGAAGGCAGTTCCAAGAGATGAC
CACCTAGTGTTGAACAAAAGTAACAACACTAGTCTCCAGGGATCACCTGGCCCAGCAAAC
AGCAAGAAGATCTTTGTTGGAGGTTTGGCTTCATCGGTGACAGAAGCTGAGTTCAAAAAG
TATTTTGCTCAGTTTGGGGTGATCACTGATGTGGTGGTGATGTATGACCACAGAACCCAG
CGACCGAGAGGCTTCGGGTTCATCTCTTTTGAGTCAGAGGACGCTGTAGACAAAGTTCTG
CAGAGGACATTCCACGAACTCAATGGAAAGATGGTGGAGGTCAAACTGGCTGTTCCTAAG
GAAATGGCTCTGAACCCTATCCGGAACCAAATGAATGTAAATAGCTTTGGTAATAGTAGA
ATCAGTGCATTGCTGATGAACGAGTACACCCAAGGGTTCAGCCCGAGTCCAATCTCCGGT
TATGGAGTCAAACCTGAAGTTAGGTACAGTCCAGGATTAGGTAATAGGGGTGGTGGATTC
TCACCGTTTGGACATGGATATGGAATTGAGCTGAACTTTGAGCCAGATCAGAGTCAGAAC
TTTGGATCTGGTTCCAGTGCAGGCTTTGGACGGCCCTTTAGCCCAGGATATGCCGCGAGG
CTTGGCAGGTACGGTAGCCAGATTGAGTCAGGAGGAGTTGGTAACGGTTCTGTGCTAAAT
GCAACAACAAAGAACCAGTT
Pro Sequence
MGKRLKGVYYNTNQQRISISLLLPLLPFLKLRNPGSWVDRFSQSDQDPVV
RFHPSLFSKRMEMESCKLFIGGISWETTEDRLREYFQSFGEVLEAVIMKD
RATGRARGFGFLVFSDPIVAERVVLLRHVIDGKLVEAKKAVPRDDHLVLN
KSNNTSLQGSPGPANSKKIFVGGLASSVTEAEFKKYFAQFGVITDVVVMY
DHRTQRPRGFGFISFESEDAVDKVLQRTFHELNGKMVEVKLAVPKEMALN
PIRNQMNVNSFGNSRISALLMNEYTQGFSPSPISGYGVKPEVRYSPGLGN
RGGGFSPFGHGYGIELNFEPDQSQNFGSGSSAGFGRPFSPGYAARLGRYG
SQIESGGVGNGSVLNATTKNQLWGNGGGLGYMSNSPISRSSFNGMSSLGS
IGDNWGRNSYRSEGGGGLGLEAMRGAHVGGYSSGSSSLENDSMYSDSAWL
SMPAKAEERMGAFDFMSRGPAGYINRQPNGAKMAGRLSGVASRIMGGNGI
VARSAASSLRQRAGMGLPVGKHIVPDKPLSVNDELMWDNGTAFPEPCIDR
IADTVGKYEALGWLCGGLSFFGALGMLAVLNDKASKVPFTPRVYPYDNLR
VELGGEP
mRNA Sequence
ATGGGTAAAAGACTAAAAGGTGTGTACTACAATACAAACCAACAAAGAATTTCAATCTCCCTTCTTCTTC
CTCTTCTCCCTTTTCTTAAACTTCGGAATCCAGGATCGTGGGTCGATCGGTTCTCACAATCCGATCAAGA
CCCAGTAGTTCGTTTTCATCCTTCACTGTTTTCCAAAAGAATGGAGATGGAATCATGTAAGCTTTTCATC
GGTGGGATCTCTTGGGAGACCACTGAAGATCGTCTCCGCGAGTATTTTCAGAGTTTCGGTGAGGTTTTGG
AGGCCGTTATCATGAAGGATCGAGCCACTGGTCGTGCTCGTGGCTTTGGTTTCCTTGTTTTCTCTGACCC
CATTGTCGCTGAGCGAGTGGTCTTGCTCAGACACGTCATTGATGGTAAACTTGTTGAGGCGAAGAAGGCA
GTTCCAAGAGATGACCACCTAGTGTTGAACAAAAGTAACAACACTAGTCTCCAGGGATCACCTGGCCCAG
CAAACAGCAAGAAGATCTTTGTTGGAGGTTTGGCTTCATCGGTGACAGAAGCTGAGTTCAAAAAGTATTT
TGCTCAGTTTGGGGTGATCACTGATGTGGTGGTGATGTATGACCACAGAACCCAGCGACCGAGAGGCTTC
GGGTTCATCTCTTTTGAGTCAGAGGACGCTGTAGACAAAGTTCTGCAGAGGACATTCCACGAACTCAATG
GAAAGATGGTGGAGGTCAAACTGGCTGTTCCTAAGGAAATGGCTCTGAACCCTATCCGGAACCAAATGAA
TGTAAATAGCTTTGGTAATAGTAGAATCAGTGCATTGCTGATGAACGAGTACACCCAAGGGTTCAGCCCG
AGTCCAATCTCCGGTTATGGAGTCAAACCTGAAGTTAGGTACAGTCCAGGATTAGGTAATAGGGGTGGTG
GATTCTCACCGTTTGGACATGGATATGGAATTGAGCTGAACTTTGAGCCAGATCAGAGTCAGAACTTTGG
ATCTGGTTCCAGTGCAGGCTTTGGACGGCCCTTTAGCCCAGGATATGCCGCGAGGCTTGGCAGGTACGGT
AGCCAGATTGAGTCAGGAGGAGTTGGTAACGGTTCTGTGCTAAATGCAACAACAAAGAACCAGTTATGGG
GTAATGGTGGTGGTCTAGGTTACATGTCAAACTCACCAATATCTAGAAGCAGCTTCAATGGAATGTCTTC
ACTAGGCAGCATCGGAGACAACTGGGGACGTAATAGCTACCGCAGTGAGGGAGGAGGAGGCTTAGGATTA
GAAGCAATGAGAGGGGCTCATGTTGGTGGTTACAGCAGCGGCTCAAGCAGCTTGGAGAATGACTCTATGT
ACAGTGACTCGGCGTGGCTTTCGATGCCTGCAAAGGCGGAGGAAAGAATGGGAGCGTTTGACTTCATGTC
TAGAGGACCAGCTGGATACATCAACAGGCAACCAAACGGAGCGAAAATGGCAGGAAGATTGAGCGGTGTG
GCCTCACGAATCATGGGTGGAAACGGCATCGTTGCCCGATCCGCCGCCTCCTCTCTCCGCCAACGCGCCG
GCATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGACAAGCCTCTTTCGGTGAACGACGAGCTGATGTG
GGACAACGGGACTGCGTTTCCAGAGCCTTGCATAGATCGGATTGCTGACACCGTCGGGAAGTATGAAGCA
TTGGGATGGTTGTGTGGCGGTCTAAGCTTCTTTGGGGCTCTTGGTATGCTCGCTGTTTTGAACGATAAAG
CTTCAAAAGTTCCTTTTACACCGCGAGTGTATCCGTATGATAACCTGAGAGTGGAGCTTGGAGGAGAGCC
ATAGAGGAGACCTATCAAGTGATCTACTGAATCAAAACTCAAGCAGTGTTTTCTTCACTGCTTTGTTTTT
TAAAATTTTTAAACTTCGTGCTCAGAACTTGAAGACAAAATAATAAAACAGACTTGTGTTTTCCATTATA
TTGTGATGTCTCTGTAATTATCAAAGACCATTTGGGTG