BrassicaPanDB

CDS Sequence (200 bp)

ATGGGTGGCGTAGGAGGAGGAATGACATACAAGGGAGTCTCCGTGCAAACTCCGAAGACGTGGCACACCG
TCGCCGGAAAGGGCTTGTGCGGCGTCATGTGGTTCTGGATTCTGTACAGAGCAAAGCAAGACGGTCCTGT
AGTCATGGGATGGAGGCACCCCTGGGATGGCCATGGTGACCACGGAGACCATCACTAG

Upstream Sequence

ATGGGTGGCGTAGGAGGAGGAATGACATACAAGGGAGTCTCCGTGCAAACTCCGAAGACGTGGCACACCG
TCGCCGGAAAGGGCTTGTGCGGCGTCATGTGGTTCTGGATTCTGTACAGAGCAAAGCAAGACGGTCCTGT
AGTCATGGGATGGAGGCACCCCTGGGATGGCCATGGTGACCACGGAGACCATCACTAG

Downstream Sequence

GGTACATCTCTATCTTTTAATTGATTTTTCGAAGAATCGAATCCATGTTAATTCGTGTTT
CAGCTTGTGAATGTCAAACTTAGGATTAGAGGCAATAAGGTAGATGTTGATTTGAAGTTG
ATTATGATTTGAAGAACCAATCACCTAGATATTGTTTTTTTTTCTTAGCATTCACATCAT
AAACTCATCATCTTGATATATTTTTTAAAGGTTCTGGATTCTGTACAGAGCAAAGCAAGA
CGGTCCTGTAGTCATGGTAAGTAACACTCTCACTCTTTGTTACGTCTATATAGTTTTTTA
TTTATTTCATTTGTTTCGTTTCTTACTCCCTCCATGGTGGTGGCTAAATGTGTGATCTTT
GTTACTTGGCAACTACTAGGGATGGAGGCACCCCTGGGATGGCCATGGTGACCACGGAGA
CCATCACTAGGTAATGAATGTGATCACGCTTTTGATAGTTCTTAAGCACATTTTGGTTAT
CACCGGAATATTGAAAAAATATCAAATGCCTTATTAAACATTTGGGCTACTTGCCAAAAA
ACTTCATACTAATGAAGTTGGATACTATTTATATATTAGACATTATTTGTCTAAACTTTA
ATGTGGGACTTGGATTGATTTCCCATCGGCAATCCTCTTAGAGGCGAAGTGAAGTGTTAT
TATCTTGAAGCTTGTTATTAGTTTTGTGGCACatgtttcgagttttcttttaattgagac
acatcgatagatttgatgttagCCATACACTGATGGTGCTATATTACCCTCGAATTCACC
TCTCTGGAACCTCGTTACAATCTTTTGTATATGTTGCTCAAATTGCGTGAGCTAAACTTG
TTTTGGTTTTTCACTCTAGGTGGTATCATTGAACCTTTTGAAGATCATGACGAGAAAATG
GACCGTCTCTGTTTTATTTTCAGCTTAATATGTCGAAATAAAGAGAATTGTGAAGAAGAC
GTGATATTGTTTCTGTACACACCTTTGTAAGACTTGATTTTAGTTGCTACTCCGGTTGGT
GTTACACTATTTGTTGTTTTGCTGTCTTTAAACAAATGAATTTTAAAATAAATCGATTGC
TAATCTCGTGGTGTGTAGGAATCGGCAAGTGTTTGATTGCGAAGGGTTCTTAAAATTGTA
TCTATGGTTCCAAACTCGATAACATTTTAAGTCATACAAACTGTTGACATATGTCCGTCT
ATCTATTTGTAGGTGTTTGTATTACCGCGGTGTATAAATCTGAGATTTTGAAATAATGCA
AAAATTTTGGAACATAGTCAAATTCATAACCGATTGTCCGGGATAACATGTCTAGTCTCA
CTATGGTTCCACCGTGTGTATTAATGGATATTATTTTTATTAATCTTCGCCAGTAGCCAA
ATTGGCTGCCGCCATTATCTTCACCTTTATTCGCTCCATTTCCTCTATCTCTTGAATTAT
GTTTTTTTTTCTTTTGATTTCCTTACCTTACAACATAAATGCTGGGAGACATTTCAACTA
AAGTCTTTGTTACACCTTTATTATGAGTGTTCCCTACAAAGACCTTGACTTCTCTTATCA
TACATTTATCAGTTAACTATAGCAATCATTCACTTAACGTACGTCATACGACTTTAGAGT
GTTCTGATTAGGCCTCGGCGGTCGGGTTTCCGGGTCGGATTCAGACGGTTTCTTTCGGGT
CCGGGTCCTTTTAGACTCAATAGGTACTTACAAAAATTTTGGTTCGGGTTCATGTCGATT
TTTCTCGGGTTCGGGTCAGTTCGGGTCAATAATTAAAATACATATAAAATATCCATAGCT
TTTGAGTTTATATTGGGTCCGCATCGGGTTCGGATATTTAAGATATGAAAAAACATGAAA
TATCTAAATTCCATCAATTTAGTTGATATTTGTCATATATATCTAAAATTTACAAAATAA
CTAAATTAAACTATTAATaattataataaaatgttattaaactctaaattttacatttta
aagtttcatattacttaaaa

Pro Sequence

MGGVGGGMTYKGVSVQTPKTWHTVAGKGLCGVMWFWILYRAKQDGPVVMG
WRHPWDGHGDHGDHH

mRNA Sequence

ATGGGTGGCGTAGGAGGAGGAATGACATACAAGGGAGTCTCCGTGCAAACTCCGAAGACGTGGCACACCG
TCGCCGGAAAGGGCTTGTGCGGCGTCATGTGGTTCTGGATTCTGTACAGAGCAAAGCAAGACGGTCCTGT
AGTCATGGGATGGAGGCACCCCTGGGATGGCCATGGTGACCACGGAGACCATCACTAG

Genome:
ZS11:	ZS11_C06G33100.t1
ZS11_v0:	BnaC06T0267800ZS
WE:	WE_A07G29570.t1
WE_v0:	BnaA07T0239000WE
Darmor:	C06p32170.1_BnaDAR
BH:	BnaC06T297300BH
Quinta:	BnaC06T0254800QU
ZS2:	BnaC06T261300ZS2
SW:	BnaC06T447500SW
Express61:	A07p022550.1_BnaEXP
Xiaoyun:	BnaC06G0275600XY
P202:	BnaA04G013890P202.1
BL:	BnaC06T297300BH
TA:	BnaC06T265200TA
Da-Ae:	Not available
RB:	BnaC06T281900RB
No2127:	BnaC06T0254300NO
P130:	BnaA04G019120P130.1
Length:	65
KOG ID:	-
KOG E-value:	Not available
KOG Score:	Not available
KOG Annotation:	-
Biological Process:	-
Cellular Component:	GO:0005743(mitochondrial inner membrane),GO:0005747(mitochondrial respiratory chain complex I)
Molecular Function:	-
KEGG Ortholog:	-
NR Protein:	XP_013590466.1
NR E-value:	2.400000e-35
NR Score:	152.5
NR Annotation:	XP_013590466.1 PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2-like [Brassica oleracea var. oleracea]
SwissProt Protein:	Q8LDK3\|NDUB2_ARATH
SwissProt E-value:	3.160000e-26
SwissProt Score:	93.6
SwissProt Annotation:	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=At1g76200 PE=3 SV=1

DETAIL

Detail for ZS11_C06G33100.t1

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