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Detail for ZS11_A02G41320.t1

Genome:
ZS11: ZS11_A02G41320.t1
ZS11_v0: BnaA02T0344300ZS
WE: WE_A02G42070.t1
WE_v0: BnaA02T0341600WE
Darmor: A02p35420.1_BnaDAR
BH: BnaA02T404900BH
Quinta: BnaA02T0331400QU
ZS2: BnaA02T355100ZS2
SW: BnaA02T390500SW
Express61: A02p033790.1_BnaEXP
Xiaoyun: BnaA02G0345400XY
P202: BnaA02G027740P202.1
BL: BnaA02T404900BH
TA: BnaA02T337600TA
Da-Ae: Not available
RB: BnaA02T333600RB
No2127: BnaA02T0335800NO
P130: BnaA02G037730P130.1
Length: 281
KOG ID: KOG3049
KOG E-value: Not available
KOG Score: 513.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0006099(tricarboxylic acid cycle)
Cellular Component: -
Molecular Function: GO:0051536(iron-sulfur cluster binding),GO:0016491(oxidoreductase activity),GO:0009055(electron transfer activity)
KEGG Ortholog: K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]
NR Protein: XP_009129421.1
NR E-value: 8.700000e-167
NR Score: 591.3
NR Annotation: XP_009129421.1 PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like [Brassica rapa]
SwissProt Protein: Q8LBZ7|SDHB1_ARATH
SwissProt E-value: Not available
SwissProt Score: 513.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-1 PE=1 SV=2
CDS Sequence (858 bp)
ATGGCGTCCGGCTTGATCGGAAAATTGGTTAGAACCAATCCGTCGCGATTAACCACCGCGGCGAGGCTAA
TCCCGTCGCGATGCACAGCCTCCGCACCACAACCGGAATCAAAACCTTCGTCTAACGGCGGCAAACCATC
GAACCTGAAGACGTTCCAGATCTACCGATGGAACCCCGACAACCCCAGCAAGCCCGAGCTCCAAGACTAC
CAGATCGATCTCAAGGACTGCGGCCCGATGGTCCTCGACGCCCTAATCAAGATCAAGAACGAGACGGATC
CCTCCCTCACGTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGGGTG
CAACGGCCTCGCGTGCCTGACGAAGATCGAGGAGGGGGCGAAGGAGACGACGACGATCACTCCCTTGCCG
CATATGTTTGTGATAAAGGATCTGGTGGTGGACATGACGAATTTTTATAATCAGTATAAGAGTATCGAGC
CGTGGCTGAAGAGGAAGAGTCCGGCGTCGGATGAGCATGGGAAGGAGATTCTGCAGAGTAAGAAGGATAG
GGCGAAGCTTGATGGGATGTATGAGTGTATTTTGTGTGCTTGTTGTAGCACGTCGTGTCCTAGTTATTGG
TGGAACCCTGAGTCTTATCTTGGCCCTGCTGCTTTGCTGCATGCTAACAGGTGGATAAGCGACAGTCGTG
ATGAGTATACTAAGGAAAGACTTGAGGCTATTGACGATGAGTTCAAGCTTTACCGTTGCCATACGATCTT
GAATTGTGCCCGTGCATGTCCAAAGGGTTTGAACCCAGGCAAACAGATCGCGCATATCAAGCAACTTCAG
CGTTGA
Upstream Sequence
CCATCTTCAATCTCCCGTGAAAATGGCGTCCGGCTTGATCGGAAAATTGGTTAGAACCAATCCGTCGCGA
TTAACCACCGCGGCGAGGCTAATCCCGTCGCGATGCACAGCCTCCGCACCACAACCGGAATCAAAACCTT
CGTCTAACGGCGGCAAACCATCGAACCTGAAGACGTTCCAGATCTACCGATGGAACCCCGACAACCCCAG
CAAGCCCGAGCTCCAAGACTACCAGATCGATCTCAAGGACTGCGGCCCGATGGTCCTCGACGCCCTAATC
AAGATCAAGAACGAGACGGATCCCTCCCTCACGTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGT
GCGCGATGAACATCGACGGGTGCAACGGCCTCGCGTGCCTGACGAAGATCGAGGAGGGGGCGAAGGAGAC
GACGACGATCACTCCCTTGCCGCATATGTTTGTGATAAAGGATCTGGTGGTGGACATGACGAATTTTTAT
AATCAGTATAAGAGTATCGAGCCGTGGCTGAAGAGGAAGAGTCCGGCGTCGGATGAGCATGGGAAGGAGA
TTCTGCAGAGTAAGAAGGATAGGGCGAAGCTTGATGGGATGTATGAGTGTATTTTGTGTGCTTGTTGTAG
CACGTCGTGTCCTAGTTATTGGTGGAACCCTGAGTCTTATCTTGGCCCTGCTGCTTTGCTGCATGCTAAC
AGGTGGATAAGCGACAGTCGTGATGAGTATACTAAGGAAAGACTTGAGGCTATTGACGATGAGTTCAAGC
TTTACCGTTGCCATACGATCTTGAATTGTGCCCGTGCATGTCCAAAGGGTTTGAACCCAGGCAAACAGAT
CGCGCATATCAAGCAACTTCAGCGTTGAACTGCTTTTTGAAGTGTTGTGCGGTCACTGAAGCTAATAATC
TTCACAGTCTTGGATTTTCAATTCATTTTTTGTATTGTTGTTGCCACACCTGAAAGAAACTCTTTTGGCA
AGTCTTCCCAAGTAGATGAGCTTTGTGGTTGTATCTTGCTGAAAAATCTCTCGAGTAATAAAACTGAAGA
AAACTTAAACCTCATCTACTCTTTTGTGTTCCACCTGCAGTGTTTTATAAAATATACATGAACACAACGT
GCGACAAAGAAGATGGTGGGTCTCGCGATAATGATGAAATTTTTTGTATGATG
Downstream Sequence
GGTAATGATTAGAGATTGGTAGTGTTGATGGCTTGTGAATAATGGATATAGAAATGAATT
GCGAATGATAGGACTTAGGACCTGCTTTGAGAATTTGAATGGATGGTTGGGAAGATTCGT
GTATACATAACTTGTTGTTAGCTGCATTGATTCGACTTGTATCTAATTGTAGGAACCGCA
TGTTCAATGTTTTGGTTTAGGAAGTTGGTTTTGATTGAGTTAGTAGATAAAGTTTTGATC
TTTCGATGTGTTTGTAACACTATTCAAGTTGAATTTTTAGGGGAATAGGTTGCATGTTGT
AGGAATAGGAACCTGTTTTTTAGAATGTGCATGGAGGGTTGGGAAGATTCGTGTATATAT
ATCTTGTTGTTAGCTGCATTGATTCGACTTGTATCTAATTGTAGAAACAGTATGTTCAAT
GTTTTGGTTTGGGAAGTTGTTTTTTTTATCGAgtcagtagataaaGTTTTGATTTTTCGA
TGTGTTTGTAACACTATTCCAGTTTCTTTTTTATGGGAATAGGTTGCATGTTGTAGGAAT
AGGAACCTGTTTTTGAGAATGTGCATGGAGGGTTGGGAAGATTCGTGTATATATATCTTG
TTGTTAGCTGTATTTGTTGGACTTGTGTTGTGTTGCTTGAATTAGTGTTTCCAGTCTAGC
TAATTGTAGAAATATTATGTTCCGTGTTTTGGTTTGGGAAGATGATTTTGATTGAGTTAG
TAGATAAAGTTTTGATCTTTCAATGTGTTTTAACACTATTCAAGTTGGCTTTTTATGGGA
ATAGGCTGCATAATGTAGGACTAGGAACCTGTTTTCAGACAGAATTTGCATGGATGGTTG
AGAGTTCGTGTATACAACATATCTTGTTGTTAGCTGCATTGATTCGACTTGTGTTGTGTG
GTTCTTCACTTTTGTTTTGCTGCTTGAATTGGTGTTTCCAATCTAATTGTAGAAACAGTA
TGTTCAATGTTTTGGTTTGGTCAGCTGTTTTCAGTCGAGCCAGTAGATAAAGTTTTGATC
TTTCAATGGGAAGATTCGTGTACGCATATGACATATCTTGTTGTTAGCCGCATTGACTCG
GCTTGTGTGGTTCTTCATTTCTGTTTTGCTGCTTGAATTGGTGTTTTAGCAATCGGATTG
TGGAAACAGTATATTCAATGTTTTTTGGTTGGGGAAGCTAATTATAATCGAGGTAGTAGA
TAAAGTTTTGATCTTTCGATGTGTGTTGTAACAAGATACTTGTTTTCACATGTGCAGGTG
GATAAGCGACAGTCGTGATGAGTATACTAAGGAAAGACTTGAGGCTATTGACGATGAGTT
CAAGCTTTACCGTTGCCATACGATCTTGAATTGTGCCCGTGCATGTCCAAAGGGTTTGAA
CCCAGGCAAACAGATCGCGCATATCAAGCAACTTCAGCGTTGAACTGCTTTTTGAAGTGT
TGTGCGGTCACTGAAGCTAATAATCTTCACAGTCTTGGATTTTCAATTCATTTTTTGTAT
TGTTGTTGCCACACCTGAAAGAAACTCTTTTGGCAAGTCTTCCCAAGTAGATGAGCTTTG
TGGTTGTATCTTGCTGAAAAATCTCTCGAGTAATAAAACTGAAGAAAACTTAAACCTCAT
CTACTCTTTTGTGTTCCACCTGCAGTGTTTTATAAAATATACATGAACACAACGTGGTAA
GATTAACATAACCACAAGTACTGGCACAAACAAGAAAAGATACATTGACAACATTTGCTC
TGTTATTCATATCTTTTGGTCACGGACATAACAGCGACAAAGAAGATGGTGGGTCTCGCG
ATAATGATGAAATTTTTTGTATGATGTGCGGGTTATGATGGAACATGTGTTGGATGATTT
GATGAAGAAGATGGTTGGTGTTTGGTCTGAAAAGGAAAGAAACGATGATGCCCTCTTTCA
CGTGGCTCAGCTTTTTCTTTTGGGAATGTAATATAATTGTTTATAGAGACGCTTGTTTAT
TTTATCTTTCACGTAAAGTT
Pro Sequence
MASGLIGKLVRTNPSRLTTAARLIPSRCTASAPQPESKPSSNGGKPSNLK
TFQIYRWNPDNPSKPELQDYQIDLKDCGPMVLDALIKIKNETDPSLTFRR
SCREGICGSCAMNIDGCNGLACLTKIEEGAKETTTITPLPHMFVIKDLVV
DMTNFYNQYKSIEPWLKRKSPASDEHGKEILQSKKDRAKLDGMYECILCA
CCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKL
YRCHTILNCARACPKGLNPGKQIAHIKQLQR
mRNA Sequence
CCATCTTCAATCTCCCGTGAAAATGGCGTCCGGCTTGATCGGAAAATTGGTTAGAACCAATCCGTCGCGA
TTAACCACCGCGGCGAGGCTAATCCCGTCGCGATGCACAGCCTCCGCACCACAACCGGAATCAAAACCTT
CGTCTAACGGCGGCAAACCATCGAACCTGAAGACGTTCCAGATCTACCGATGGAACCCCGACAACCCCAG
CAAGCCCGAGCTCCAAGACTACCAGATCGATCTCAAGGACTGCGGCCCGATGGTCCTCGACGCCCTAATC
AAGATCAAGAACGAGACGGATCCCTCCCTCACGTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGT
GCGCGATGAACATCGACGGGTGCAACGGCCTCGCGTGCCTGACGAAGATCGAGGAGGGGGCGAAGGAGAC
GACGACGATCACTCCCTTGCCGCATATGTTTGTGATAAAGGATCTGGTGGTGGACATGACGAATTTTTAT
AATCAGTATAAGAGTATCGAGCCGTGGCTGAAGAGGAAGAGTCCGGCGTCGGATGAGCATGGGAAGGAGA
TTCTGCAGAGTAAGAAGGATAGGGCGAAGCTTGATGGGATGTATGAGTGTATTTTGTGTGCTTGTTGTAG
CACGTCGTGTCCTAGTTATTGGTGGAACCCTGAGTCTTATCTTGGCCCTGCTGCTTTGCTGCATGCTAAC
AGGTGGATAAGCGACAGTCGTGATGAGTATACTAAGGAAAGACTTGAGGCTATTGACGATGAGTTCAAGC
TTTACCGTTGCCATACGATCTTGAATTGTGCCCGTGCATGTCCAAAGGGTTTGAACCCAGGCAAACAGAT
CGCGCATATCAAGCAACTTCAGCGTTGAACTGCTTTTTGAAGTGTTGTGCGGTCACTGAAGCTAATAATC
TTCACAGTCTTGGATTTTCAATTCATTTTTTGTATTGTTGTTGCCACACCTGAAAGAAACTCTTTTGGCA
AGTCTTCCCAAGTAGATGAGCTTTGTGGTTGTATCTTGCTGAAAAATCTCTCGAGTAATAAAACTGAAGA
AAACTTAAACCTCATCTACTCTTTTGTGTTCCACCTGCAGTGTTTTATAAAATATACATGAACACAACGT
GCGACAAAGAAGATGGTGGGTCTCGCGATAATGATGAAATTTTTTGTATGATG