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DETAIL

Detail for ZS11_C07G33540.t1

Genome:
ZS11: ZS11_C07G33540.t1
ZS11_v0: BnaC07T0261200ZS
WE: WE_C07G34020.t1
WE_v0: BnaA02T0308000WE
Darmor: C07p31220.1_BnaDAR
BH: BnaC07T275500BH
Quinta: BnaC07T0240500QU
ZS2: BnaC07T242600ZS2
SW: BnaC07T275700SW
Express61: C09p023750.1_BnaEXP
Xiaoyun: BnaC07G0274400XY
P202: BnaC07G069210P202.1
BL: BnaC07T275500BH
TA: BnaA06T381100TA
Da-Ae: rna-gnl|WGS:JAGKQM|BnaA01g36910D
RB: BnaC07T281800RB
No2127: BnaA09T0149600NO
P130: BnaC02G053560P130.1
Length: 524
KOG ID: KOG4205
KOG E-value: Not available
KOG Score: 563.0
KOG Annotation: RNA processing and modification
Biological Process: -
Cellular Component: -
Molecular Function: GO:0003723(RNA binding),GO:0003676(nucleic acid binding)
KEGG Ortholog: K14411 MSI; RNA-binding protein Musashi
NR Protein: VDC60305.1
NR E-value: 2.000000e-233
NR Score: 813.5
NR Annotation: VDC60305.1 unnamed protein product [Brassica rapa]
SwissProt Protein: Q9FGK0|NDUB8_ARATH
SwissProt E-value: 4.860000e-68
SwissProt Score: 218.0
SwissProt Annotation: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g47570 PE=2 SV=1
CDS Sequence (1597 bp)
ATGAAGGATCGTTCCACTGGTCGTGCTCGTGGCTTTGGTTTCCTTGTCTTCGCTGATCCCAATGTTGCCG
AGAGAGTCGTGCTGCTCAGACACGTCATTGATGGTAAACTTGTTGAGGCGAAGAAGGCAGTTCCAAGAGA
TGATCACAAAAGTAACAGCAGTCTACAGGGATCATCACCTGGTCCAGCTAACAGTAAAAAGATCTTTGTT
GGAGGTTTGGCTTCATCGGTTACAGAGGCTGAGTTCAAGAAGTACTTTGCTCAGTTTGGGGTGATTACTG
ATGTTGTGGTGATGTATGACCAACGAACACAGCGACCGAGAGGCTTTGGGTTCATCTCTTATGAATCAGA
GGACGCTGTAGACAGAGTCTTGCGAAGGACGTTCCACGAACTCAATGGGAAGATGGTGGAAGTCAAACTG
GCTGTTCCCAAGGACCCAGTCCGGAACCAGATGAATGTAAATGGCTTTGGCAGTAATAGAATCAGTGCGT
TGCTGATGAACGAGTACACACAAGGGTTCACCCCGAGTCCAATCTCAAGTTATGGAGTGAAACCTGAGGT
TAGGTACAGTCCAGGAGTAGTTAATAGGGGCGGATTCTCACCTTTTGGACATGGATATGGGATTGATCTG
AATTTCGAGCAAGACCAGACTCAGAGGTATGGATCTGGTTCCAGTGCAGGCTTTGGACGGCCCTTTAGCC
CTGGATATACTCCGAGCCTTAGCAGGTACGGTAGCCAGATTGAGACAGGAGGAGGAGCTAACGGTTCTGT
GCTAAATGCATCAACAAAGAACCATTTATGGGGAAATGGTGGTGGTCTAGGTTACATGTCAAACTCACCC
GTCTCTAGAAGCAGCTTCAATGGAAACTCTGGAATGTCTTCACTAGGCAGCATTGGAGACAACTGGGGAG
GAGCAGGTGCACGTGCACGTAATAGCTATCGCAGTGAGGGAGGAGGCTTAGGATTAGAAGCAATGAGAGG
AGTTCATGTTGGTGGTTTCAGCAACGGTTTGAACAGCTTGGAGGCAGACTCTCTCTACAGTGACTCGGCG
TGGCTTTCGATGCCTGCAAAGGCGGATGAAAAATTGGGAATGGGAGCATTTGACTTCATGTCTAGAGGAC
CGGCTGGATACATCAACAGGCAACCAAACGGAGAGAAAACTCCGAAACGAAAAAAGAAAAGCATCGGAAA
AACGAAAATGGCAGGAAGATTGAGCGGTGTGGCCTCACGGATCATGGGTGGAAACGGCGTCGTTGCACGA
TCCAACGCCTCATCTCTCCGCCAACGCGCGGGGATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGATA
AGCCTCTTTCGGTTAACGACGAGCTGATGTGGGACAACGGGACTGCGTTCCCAGAGCCTTGCATAGATCG
AATTGCTGACACCGTCGGGAAGTACGAAGCATTGGGATGGTTGTGTGGCGGTCTAGGGTTCTTTGCCACT
CTCGGTTTACTCGCTGTTGTGAACGACAAAGCTTCAAAGGTTCCTTTTGCACCACGAGTGTATCCGTATG
ACAACCTGAGAGTGGAGCTTGGAGGAGAGCCATAG
Upstream Sequence
ATGAAGGATCGTTCCACTGGTCGTGCTCGTGGCTTTGGTTTCCTTGTCTTCGCTGATCCCAATGTTGCCG
AGAGAGTCGTGCTGCTCAGACACGTCATTGATGGTAAACTTGTTGAGGCGAAGAAGGCAGTTCCAAGAGA
TGATCACAAAAGTAACAGCAGTCTACAGGGATCATCACCTGGTCCAGCTAACAGTAAAAAGATCTTTGTT
GGAGGTTTGGCTTCATCGGTTACAGAGGCTGAGTTCAAGAAGTACTTTGCTCAGTTTGGGGTGATTACTG
ATGTTGTGGTGATGTATGACCAACGAACACAGCGACCGAGAGGCTTTGGGTTCATCTCTTATGAATCAGA
GGACGCTGTAGACAGAGTCTTGCGAAGGACGTTCCACGAACTCAATGGGAAGATGGTGGAAGTCAAACTG
GCTGTTCCCAAGGACCCAGTCCGGAACCAGATGAATGTAAATGGCTTTGGCAGTAATAGAATCAGTGCGT
TGCTGATGAACGAGTACACACAAGGGTTCACCCCGAGTCCAATCTCAAGTTATGGAGTGAAACCTGAGGT
TAGGTACAGTCCAGGAGTAGTTAATAGGGGCGGATTCTCACCTTTTGGACATGGATATGGGATTGATCTG
AATTTCGAGCAAGACCAGACTCAGAGGTATGGATCTGGTTCCAGTGCAGGCTTTGGACGGCCCTTTAGCC
CTGGATATACTCCGAGCCTTAGCAGGTACGGTAGCCAGATTGAGACAGGAGGAGGAGCTAACGGTTCTGT
GCTAAATGCATCAACAAAGAACCATTTATGGGGAAATGGTGGTGGTCTAGGTTACATGTCAAACTCACCC
GTCTCTAGAAGCAGCTTCAATGGAAACTCTGGAATGTCTTCACTAGGCAGCATTGGAGACAACTGGGGAG
GAGCAGGTGCACGTGCACGTAATAGCTATCGCAGTGAGGGAGGAGGCTTAGGATTAGAAGCAATGAGAGG
AGTTCATGTTGGTGGTTTCAGCAACGGTTTGAACAGCTTGGAGGCAGACTCTCTCTACAGTGACTCGGCG
TGGCTTTCGATGCCTGCAAAGGCGGATGAAAAATTGGGAATGGGAGCATTTGACTTCATGTCTAGAGGAC
CGGCTGGATACATCAACAGGCAACCAAACGGAGAGAAAACTCCGAAACGAAAAAAGAAAAGCATCGGAAA
AACGAAAATGGCAGGAAGATTGAGCGGTGTGGCCTCACGGATCATGGGTGGAAACGGCGTCGTTGCACGA
TCCAACGCCTCATCTCTCCGCCAACGCGCGGGGATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGATA
AGCCTCTTTCGGTTAACGACGAGCTGATGTGGGACAACGGGACTGCGTTCCCAGAGCCTTGCATAGATCG
AATTGCTGACACCGTCGGGAAGTACGAAGCATTGGGATGGTTGTGTGGCGGTCTAGGGTTCTTTGCCACT
CTCGGTTTACTCGCTGTTGTGAACGACAAAGCTTCAAAGGTTCCTTTTGCACCACGAGTGTATCCGTATG
ACAACCTGAGAGTGGAGCTTGGAGGAGAGCCATAG
Downstream Sequence
TGTAAGTGAAGTCCCTTTTTAGAACAGAACCTATACTATCAGCTCAAGAGTTGAGGATTG
CCACATCACATATATATTGCCCAAGGAACCAACACCCACACGATGTGGGATGTTAATATA
TATACTACATTGCTTGCTTCGTTCAGTGATTGAGTTGATTGAAGTAGAGGTTGCTGCTTC
TCCAAGCAAAGCTATTCTTTTTATTCATATTCCTGATACATTTTTTTTTATGCATGATCA
TAGGTTGAGGCGAAGAAGGCAGTTCCAAGAGATGATCACAAAAGTAACAGCAGTCTACAG
GGATCATCACCTGGTCCAGCTAACAGTAAAAAGATCTTTGTTGGAGGTTTGGCTTCATCG
GTTACAGAGGCTGAGTTCAAGAAGTACTTTGCTCAGTTTGGGGTGATTACTGATGTTGTG
GTGATGTATGACCAACGAACACAGCGACCGAGAGGCTTTGGGTTCATCTCTTATGAATCA
GAGGACGCTGTAGACAGAGTCTTGCGAAGGACGTTCCACGAACTCAATGGGAAGATGGTG
GAAGTCAAACTGGCTGTTCCCAAGGACCCAGTCCGGAACCAGATGAATGTAAATGGCTTT
GGCAGTAATAGAATCAGTGCGTTGCTGATGAACGAGTACACACAAGGGTTCACCCCGAGT
CCAATCTCAAGTTATGGAGTGAAACCTGAGGTTAGGTACAGTCCAGGAGTAGTTAATAGG
GGCGGATTCTCACCTTTTGGACATGGATATGGGATTGATCTGAATTTCGAGCAAGACCAG
ACTCAGAGGTATGGATCTGGTTCCAGTGCAGGCTTTGGACGGCCCTTTAGCCCTGGATAT
ACTCCGAGCCTTAGCAGGTACGGTAGCCAGATTGAGACAGGAGGAGGAGCTAACGGTTCT
GTGCTAAATGCATCAACAAAGAACCATTTATGGGGAAATGGTGGTGGTCTAGGTTACATG
TCAAACTCACCCGTCTCTAGAAGCAGCTTCAATGGAAACTCTGGAATGTCTTCACTAGGC
AGCATTGGAGACAACTGGGGAGGAGCAGGTGCACGTGCACGTAATAGCTATCGCAGTGAG
GGAGGAGGCTTAGGATTAGAAGCAATGAGAGGAGTTCATGTTGGTGGTTTCAGCAACGGT
TTGAACAGCTTGGAGGCAGACTCTCTCTACAGTGACTCGGCGTGGCTTTCGATGCCTGCA
AAGGCGGATGAAAAATTGGGAATGGGAGCATTTGACTTCATGTCTAGAGGACCGGCTGGA
TACATCAACAGGCAACCAAACGGAGGTATGAACAATGATCACCTTTTTTCATCTAAGAAC
ATGAACATATTTGTGTTCTTATTGGAAAAAAAAAACTGATGAAATCATATGATTAATATT
GCTGTTGCAGGAATTGCAGCTTAGAGAAGTGAGAAATATATTCCATGGAGATCAGATGAT
GATTTGGCTATTTGCAGGAGAGAGTTTTTAGAAGAGGGAAAAAAAGTTTTTTAAAAACTG
TTCAAAAATACCTTAAAGCTTTCCTTTACTTTTTACTATTTTAACTGTTGCTTTAGTTTT
TATTTTCACCCTTGTTTTCTAATTTGGGGTTTTGGTTCTTTAATCTTTAAAAAAACTGTA
AACTGAGTTATATATAAAGAGGCAAAAAAACAGTGAAGTGTATGAAGTTCTTGTCTTTCT
TCTTTGTTAAATCTTTAGAGATATTGACATATTCAAACATGATCGAAAACGAATTAAAAT
AAAGAGAGAGAGCAAAGGTATTGCCTAGAATGTAGGCAACGTAGAGTGAGGGCAACATGT
GGCAAACATGTGGATGATGATAAGCCAAGAAGGACAAAGGAGCAATCCCATCATCTATCA
CAATAATATCCATTTATTATGTGAAGTGGACCAAAAGAGAGAGAAGGCGAGTGTTATAGT
CCTCAAAATACAGACGAAACATCCTAATCCTGAGAGCTTCAAGACTTCACTGGAACCCTC
GCCACCATTGTCCCCACACT
Pro Sequence
MKDRSTGRARGFGFLVFADPNVAERVVLLRHVIDGKLVEAKKAVPRDDHK
SNSSLQGSSPGPANSKKIFVGGLASSVTEAEFKKYFAQFGVITDVVVMYD
QRTQRPRGFGFISYESEDAVDRVLRRTFHELNGKMVEVKLAVPKDPVRNQ
MNVNGFGSNRISALLMNEYTQGFTPSPISSYGVKPEVRYSPGVVNRGGFS
PFGHGYGIDLNFEQDQTQRYGSGSSAGFGRPFSPGYTPSLSRYGSQIETG
GGANGSVLNASTKNHLWGNGGGLGYMSNSPVSRSSFNGNSGMSSLGSIGD
NWGGAGARARNSYRSEGGGLGLEAMRGVHVGGFSNGLNSLEADSLYSDSA
WLSMPAKADEKLGMGAFDFMSRGPAGYINRQPNGEKTPKRKKKSIGKTKM
AGRLSGVASRIMGGNGVVARSNASSLRQRAGMGLPVGKHIVPDKPLSVND
ELMWDNGTAFPEPCIDRIADTVGKYEALGWLCGGLGFFATLGLLAVVNDK
ASKVPFAPRVYPYDNLRVELGGEP
mRNA Sequence
ATGAAGGATCGTTCCACTGGTCGTGCTCGTGGCTTTGGTTTCCTTGTCTTCGCTGATCCCAATGTTGCCG
AGAGAGTCGTGCTGCTCAGACACGTCATTGATGGTAAACTTGTTGAGGCGAAGAAGGCAGTTCCAAGAGA
TGATCACAAAAGTAACAGCAGTCTACAGGGATCATCACCTGGTCCAGCTAACAGTAAAAAGATCTTTGTT
GGAGGTTTGGCTTCATCGGTTACAGAGGCTGAGTTCAAGAAGTACTTTGCTCAGTTTGGGGTGATTACTG
ATGTTGTGGTGATGTATGACCAACGAACACAGCGACCGAGAGGCTTTGGGTTCATCTCTTATGAATCAGA
GGACGCTGTAGACAGAGTCTTGCGAAGGACGTTCCACGAACTCAATGGGAAGATGGTGGAAGTCAAACTG
GCTGTTCCCAAGGACCCAGTCCGGAACCAGATGAATGTAAATGGCTTTGGCAGTAATAGAATCAGTGCGT
TGCTGATGAACGAGTACACACAAGGGTTCACCCCGAGTCCAATCTCAAGTTATGGAGTGAAACCTGAGGT
TAGGTACAGTCCAGGAGTAGTTAATAGGGGCGGATTCTCACCTTTTGGACATGGATATGGGATTGATCTG
AATTTCGAGCAAGACCAGACTCAGAGGTATGGATCTGGTTCCAGTGCAGGCTTTGGACGGCCCTTTAGCC
CTGGATATACTCCGAGCCTTAGCAGGTACGGTAGCCAGATTGAGACAGGAGGAGGAGCTAACGGTTCTGT
GCTAAATGCATCAACAAAGAACCATTTATGGGGAAATGGTGGTGGTCTAGGTTACATGTCAAACTCACCC
GTCTCTAGAAGCAGCTTCAATGGAAACTCTGGAATGTCTTCACTAGGCAGCATTGGAGACAACTGGGGAG
GAGCAGGTGCACGTGCACGTAATAGCTATCGCAGTGAGGGAGGAGGCTTAGGATTAGAAGCAATGAGAGG
AGTTCATGTTGGTGGTTTCAGCAACGGTTTGAACAGCTTGGAGGCAGACTCTCTCTACAGTGACTCGGCG
TGGCTTTCGATGCCTGCAAAGGCGGATGAAAAATTGGGAATGGGAGCATTTGACTTCATGTCTAGAGGAC
CGGCTGGATACATCAACAGGCAACCAAACGGAGAGAAAACTCCGAAACGAAAAAAGAAAAGCATCGGAAA
AACGAAAATGGCAGGAAGATTGAGCGGTGTGGCCTCACGGATCATGGGTGGAAACGGCGTCGTTGCACGA
TCCAACGCCTCATCTCTCCGCCAACGCGCGGGGATGGGTCTCCCCGTCGGCAAACACATCGTCCCCGATA
AGCCTCTTTCGGTTAACGACGAGCTGATGTGGGACAACGGGACTGCGTTCCCAGAGCCTTGCATAGATCG
AATTGCTGACACCGTCGGGAAGTACGAAGCATTGGGATGGTTGTGTGGCGGTCTAGGGTTCTTTGCCACT
CTCGGTTTACTCGCTGTTGTGAACGACAAAGCTTCAAAGGTTCCTTTTGCACCACGAGTGTATCCGTATG
ACAACCTGAGAGTGGAGCTTGGAGGAGAGCCATAG