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Detail for ZS11_C07G38580.t1

Genome:
ZS11: ZS11_C07G38580.t1
ZS11_v0: BnaC07T0305400ZS
WE: WE_C07G39380.t1
WE_v0: BnaC07T0298700WE
Darmor: C07p36440.1_BnaDAR
BH: BnaC07T321800BH
Quinta: BnaC07T0285100QU
ZS2: BnaC07T283200ZS2
SW: BnaC07T321200SW
Express61: C07p017350.1_BnaEXP
Xiaoyun: BnaC07G0319400XY
P202: BnaC07G074530P202.1
BL: BnaC07T321800BH
TA: BnaA06T348300TA
Da-Ae: Not available
RB: BnaC07T326600RB
No2127: BnaC07T0289000NO
P130: BnaC07G040360P130.2
Length: 279
KOG ID: KOG3049
KOG E-value: Not available
KOG Score: 528.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0006099(tricarboxylic acid cycle)
Cellular Component: -
Molecular Function: GO:0051536(iron-sulfur cluster binding),GO:0009055(electron transfer activity),GO:0016491(oxidoreductase activity)
KEGG Ortholog: K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]
NR Protein: XP_013593203.1
NR E-value: 2.500000e-166
NR Score: 589.7
NR Annotation: XP_013593203.1 PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial [Brassica oleracea var. oleracea]
SwissProt Protein: Q8LBZ7|SDHB1_ARATH
SwissProt E-value: Not available
SwissProt Score: 528.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-1 PE=1 SV=2
CDS Sequence (851 bp)
ATGTCGTCCGGTTTAATCGGAAGATTAGTCAGAACCAAACCGTCGCGATTAACCACCGCAGCAAGGTTGA
TCCCGTCGCGATGCACAGCCTCCGTAACCGAACCGGAACCAAAAGCGTCCTCTGGCGGCGGAAAACCATC
GAACTTCAAAACTTTCCAGATCTACCGATGGAACCCCGACAACCCTAGCAAGCCTGAGCTCCAAGACTAC
AAGATCGACCTCAAAGACTGCGGCCCCATGGTTCTCGACGCCTTGATCAAAATCAAGAACGAGATGGATC
CGTCTCTCACCTTCCGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGGGTG
CAACGGGCTCGCGTGTCTGACGAAGATCGAGGAGGGAGCCAAGGAGACGACGATCACTCCCTTGCCTCAC
ATGTTCGTGATCAAGGATCTGGTGGTGGACATGACTAACTTTTATAATCAGTACAAGAGTATTGAGCCGT
GGCTGAAGAGGAAGAACCCTCCGTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAAGGATAGGGCTAA
GCTTGATGGGATGTATGAGTGTATTCTCTGCGCTTGTTGTAGCACGTCTTGTCCTAGTTACTGGTGGAAC
CCTGAGTCTTACCTTGGCCCTGCCGCTTTGCTACATGCCAATAGGTGGATAAGCGACAGTCGTGATGAGT
ACACTAAGGAAAGACTTGAGGCTATTGACGATGAGTTCAAGCTTTACCGTTGTCATACGATCTTGAACTG
TGCTCGTGCTTGTCCTAAGGGTTTGAACCCGGGCAAACAGATCGCGCACATTAAGCAACTTCAGCGTTGA
Upstream Sequence
GTCGGTAATCTCGTGTGTTTATATAATTTGTGCGAAAAATACAATTAATTTAAAAATTAATTTTCAGACA
TAATCAATCTTCATCGATTAGTTCGCTCCGTCCCTCACTGTCTCTCACCGCGAAAAATGTCGTCCGGTTT
AATCGGAAGATTAGTCAGAACCAAACCGTCGCGATTAACCACCGCAGCAAGGTTGATCCCGTCGCGATGC
ACAGCCTCCGTAACCGAACCGGAACCAAAAGCGTCCTCTGGCGGCGGAAAACCATCGAACTTCAAAACTT
TCCAGATCTACCGATGGAACCCCGACAACCCTAGCAAGCCTGAGCTCCAAGACTACAAGATCGACCTCAA
AGACTGCGGCCCCATGGTTCTCGACGCCTTGATCAAAATCAAGAACGAGATGGATCCGTCTCTCACCTTC
CGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGGGTGCAACGGGCTCGCGT
GTCTGACGAAGATCGAGGAGGGAGCCAAGGAGACGACGATCACTCCCTTGCCTCACATGTTCGTGATCAA
GGATCTGGTGGTGGACATGACTAACTTTTATAATCAGTACAAGAGTATTGAGCCGTGGCTGAAGAGGAAG
AACCCTCCGTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAAGGATAGGGCTAAGCTTGATGGGATGT
ATGAGTGTATTCTCTGCGCTTGTTGTAGCACGTCTTGTCCTAGTTACTGGTGGAACCCTGAGTCTTACCT
TGGCCCTGCCGCTTTGCTACATGCCAATAGGTGGATAAGCGACAGTCGTGATGAGTACACTAAGGAAAGA
CTTGAGGCTATTGACGATGAGTTCAAGCTTTACCGTTGTCATACGATCTTGAACTGTGCTCGTGCTTGTC
CTAAGGGTTTGAACCCGGGCAAACAGATCGCGCACATTAAGCAACTTCAGCGTTGAAGTATTGTTGTGCG
GTCACAGTTAATGTTTGAAGCTAATAAATCTTCACGAAGTTTGATTCATTATTGTATTGTTGTTGCCGAG
TATTAGCACCTGTGAAAGAAACTCTTTTGGCAAGTTTTCCAAAGTAGATGAGCTTTGTGGTTGTATCTTG
CTGAAAAATCTCTCTTTTAAGTAATAAAACTGAAGAACAACTTAAGTTCTCATCTACTTATCATCTACTT
TTTTGTGTTCCATCTGCATTGTCTTTTATAAAAAACATTAAATGTACTTGTGTCGACACATGACCGCAAC
GTGATAGATTAACATAGCTTATCCATAGAAAAGTTCACATCAGTAATATGGTGATTCAACATCCTTGGTG
TATGATTGACTGTATAAGTATAGCTGCAAGTACTGGCACAAAAGAAGAAAGATGTCACCGACAAATGTAG
CTATGTTCTTTGTCTCTTTGGTCATTATTAGCACAGCAACTGATGTTGCTCCAGGAACCGAACAGTTTCA
GTCCTTACTAAGTTCTCAGGAACATGAGAAGCCTCAGTTTCTTACTGTGAGAGCCTCCGATTTGTGTCCA
GTGTTGCCTGATTTGAGCTTTGTGTGGACAGTTTATATGTATATATATATATATATATATATATATATAT
CTGTTTGTTCACATTCCTTACTCATACTTGGCTTTAGCCCATTTCTTTATTTG
Downstream Sequence
GGTATGCGAAACAAGTTATAGTATTGCTCGTTGGGAAGATTCGTAGTATATGTCTTGTTG
TTAGCTGCGTTAGATAAAAGTTTTGATCTTTGGATGTGTTTGTAACATTGTGAAGGTGGA
TAAGCGACAGTCGTGATGAGTACACTAAGGAAAGACTTGAGGCTATTGACGATGAGTTCA
AGCTTTACCGTTGTCATACGATCTTGAACTGTGCTCGTGCTTGTCCTAAGGGTTTGAACC
CGGGCAAACAGATCGCGCACATTAAGCAACTTCAGCGTTGAAGTATTGTTGTGCGGTCAC
AGTTAATGTTTGAAGCTAATAAATCTTCACGAAGTTTGATTCATTATTGTATTGTTGTTG
CCGAGTATTAGCACCTGTGAAAGAAACTCTTTTGGCAAGTTTTCCAAAGTAGATGAGCTT
TGTGGTTGTATCTTGCTGAAAAATCTCTCTTTTAAGTAATAAAACTGAAGAACAACTTAA
GTTCTCATCTACTTATCATCTACTTTTTTGTGTTCCATCTGCATTGTCTTTTATAAAAAA
CATTAAATGTACTTGTGTCGACACATGACCGCAACGTGATAGATTAACATAGCTTATCCA
TAGAAAAGTTCACATCAGTAATATGGTGATTCAACATCCTTGGTGTATGATTGACTGTAT
AAGTATAGCTGCAAGTACTGGCACAAAAGAAGAAAGATGTCACCGACAAATGTAGCTATG
TTCTTTGTCTCTTTGGTCATTATTAGCACAGCAACTGATGTTGCTCCAGGAACCGAACAG
TTTCAGTCCTTACTAAGTTCTCAGGAACATGAGAAGCCTCAGTTTCTTACTGTGAGAGGT
ACTATTATAGTTCCTAATACAAGTTTTAAAACCAAAGATAAGTTGAGGGAACTTGAGAGA
ATGATCTTGTACTTGTAGTTTAACATTAGTTTTGTTGTTGCTCTTCATGTGCAGGATGCA
ACAACGATTGTGAAACATCTTGCTGTGACTGCAACATAGAGATTCAGCCTCCGATTTGTG
TCCAGTGTTGCCTGATTTGAGCTTTGTGTGGACAGTTTATATGTATATATATATATATAT
ATATATATATATATCTGTTTGTTCACATTCCTTACTCATACTTGGCTTTAGCCCATTTCT
TTATTTGGCACAGCTCAATTTAGGTATTAATGACTTGTGCCAAGTATGAACTATAATGTC
AACAACCTCGAATCTTTTTTTAAATTCATCACTCTGTTATTGCCTTATCATTTCAAGATA
AATGAATTGTCAAATGATTTAACATTTGCACGTTATCTATATACAACAACTCATTAACTT
GACCTACAAACTACTCTTTTGGATCTTTACGCTAAGACCTTTTTGAGCATATTCCTTCTT
CCATTAAAGGCTCCTTGGCTTTTATATATCCCTCAAGGCTTAACTTCCAATTCAAAGTGC
TTCCCTTTTTCTTTCTTTAAAATGAGACGAGAAGGTCGGCAACATGGTATTGTCCGAACT
TACCGGATTCTTCCACCGCCGCTTAATCCAAGGCTGGTCAACTCTGCAACTCCATCCACA
TCCTCAGCAGTTTTTACCAAATTGCCATCGAAACCGACCAGAGCTCACAGGAGAATATGG
TATGGCCAGGTGCATTGGCTGAGATCAAACGACATGGCTTCTTCGTCCAGCTACAAACTC
CTCACTTGTCGTATCATTACCAGACCCGGGACCAGATCCGTTTTGGATCTTGCCGGTTTA
TCTGAACTTAATGGTAATGGCGACGATTTTAAAGAAGACAAAGGAGGAGAAGCTGAAGAT
GAAATGACAAATAGAGAGAATGGACATAATAGCGACAAAGAAGATGGCGGGGATGTTGAT
GAAAGCATGAGTTTTTACGATGTGGGGATAATGATGGAACATGTGTTAGATCACGATGAC
GATGAAGAAGAAGAAGATGGTTGGTGTTTGGTCTGAAAAAAAGGAAGTAATGATCATGTC
TCTCTCACGTGGATCAGCTT
Pro Sequence
MSSGLIGRLVRTKPSRLTTAARLIPSRCTASVTEPEPKASSGGGKPSNFK
TFQIYRWNPDNPSKPELQDYKIDLKDCGPMVLDALIKIKNEMDPSLTFRR
SCREGICGSCAMNIDGCNGLACLTKIEEGAKETTITPLPHMFVIKDLVVD
MTNFYNQYKSIEPWLKRKNPPSEPGKEILQSKKDRAKLDGMYECILCACC
STSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYR
CHTILNCARACPKGLNPGKQIAHIKQLQR
mRNA Sequence
GTCGGTAATCTCGTGTGTTTATATAATTTGTGCGAAAAATACAATTAATTTAAAAATTAATTTTCAGACA
TAATCAATCTTCATCGATTAGTTCGCTCCGTCCCTCACTGTCTCTCACCGCGAAAAATGTCGTCCGGTTT
AATCGGAAGATTAGTCAGAACCAAACCGTCGCGATTAACCACCGCAGCAAGGTTGATCCCGTCGCGATGC
ACAGCCTCCGTAACCGAACCGGAACCAAAAGCGTCCTCTGGCGGCGGAAAACCATCGAACTTCAAAACTT
TCCAGATCTACCGATGGAACCCCGACAACCCTAGCAAGCCTGAGCTCCAAGACTACAAGATCGACCTCAA
AGACTGCGGCCCCATGGTTCTCGACGCCTTGATCAAAATCAAGAACGAGATGGATCCGTCTCTCACCTTC
CGCCGCTCGTGCCGAGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGGGTGCAACGGGCTCGCGT
GTCTGACGAAGATCGAGGAGGGAGCCAAGGAGACGACGATCACTCCCTTGCCTCACATGTTCGTGATCAA
GGATCTGGTGGTGGACATGACTAACTTTTATAATCAGTACAAGAGTATTGAGCCGTGGCTGAAGAGGAAG
AACCCTCCGTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAAGGATAGGGCTAAGCTTGATGGGATGT
ATGAGTGTATTCTCTGCGCTTGTTGTAGCACGTCTTGTCCTAGTTACTGGTGGAACCCTGAGTCTTACCT
TGGCCCTGCCGCTTTGCTACATGCCAATAGGTGGATAAGCGACAGTCGTGATGAGTACACTAAGGAAAGA
CTTGAGGCTATTGACGATGAGTTCAAGCTTTACCGTTGTCATACGATCTTGAACTGTGCTCGTGCTTGTC
CTAAGGGTTTGAACCCGGGCAAACAGATCGCGCACATTAAGCAACTTCAGCGTTGAAGTATTGTTGTGCG
GTCACAGTTAATGTTTGAAGCTAATAAATCTTCACGAAGTTTGATTCATTATTGTATTGTTGTTGCCGAG
TATTAGCACCTGTGAAAGAAACTCTTTTGGCAAGTTTTCCAAAGTAGATGAGCTTTGTGGTTGTATCTTG
CTGAAAAATCTCTCTTTTAAGTAATAAAACTGAAGAACAACTTAAGTTCTCATCTACTTATCATCTACTT
TTTTGTGTTCCATCTGCATTGTCTTTTATAAAAAACATTAAATGTACTTGTGTCGACACATGACCGCAAC
GTGATAGATTAACATAGCTTATCCATAGAAAAGTTCACATCAGTAATATGGTGATTCAACATCCTTGGTG
TATGATTGACTGTATAAGTATAGCTGCAAGTACTGGCACAAAAGAAGAAAGATGTCACCGACAAATGTAG
CTATGTTCTTTGTCTCTTTGGTCATTATTAGCACAGCAACTGATGTTGCTCCAGGAACCGAACAGTTTCA
GTCCTTACTAAGTTCTCAGGAACATGAGAAGCCTCAGTTTCTTACTGTGAGAGCCTCCGATTTGTGTCCA
GTGTTGCCTGATTTGAGCTTTGTGTGGACAGTTTATATGTATATATATATATATATATATATATATATAT
CTGTTTGTTCACATTCCTTACTCATACTTGGCTTTAGCCCATTTCTTTATTTG