SEARCH

DETAIL

Detail for ZS11_C07G55870.t1

Genome:
ZS11: ZS11_C07G55870.t1
ZS11_v0: BnaC07T0454800ZS
WE: WE_C07G56820.t1
WE_v0: BnaC07T0397900WE
Darmor: C07p53190.1_BnaDAR
BH: BnaC07T483700BH
Quinta: BnaC07T0430800QU
ZS2: BnaC07T432700ZS2
SW: BnaC07T481700SW
Express61: C07p031160.1_BnaEXP
Xiaoyun: BnaC07G0477700XY
P202: BnaA03G042120P202.1
BL: BnaC07T483700BH
TA: BnaC01T169900TA
Da-Ae: rna-gnl|WGS:JAGKQM|BnaA01g13630D
RB: BnaC07T487500RB
No2127: BnaC07T0431400NO
P130: BnaC07G055240P130.1
Length: 175
KOG ID: -
KOG E-value: Not available
KOG Score: Not available
KOG Annotation: -
Biological Process: GO:0009767(photosynthetic electron transport chain)
Cellular Component: -
Molecular Function: -
KEGG Ortholog: K00345 ndhS; NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [EC:7.1.1.-]
NR Protein: XP_013703095.1
NR E-value: 8.600000e-80
NR Score: 301.6
NR Annotation: XP_013703095.1 NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Brassica napus]
SwissProt Protein: Q9T0A4|NDHS_ARATH
SwissProt E-value: 2.590000e-74
SwissProt Score: 226.0
SwissProt Annotation: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhS PE=1 SV=1
CDS Sequence (535 bp)
ATGGCGACTTCTTCGATCACTATACCAACCATTATTCAGGGAACCAAGTTTCTCGGCCAAACCCATCTAC
TTTCAACTCCTAACCGATCGGTTTTCTCGCCTCCGAAGCAGCAACCAAACGCTCATAAAGTAAAGGCCAT
GGCTAAGTTCAACCTATGGGAAATGATGGGAGGAAGAGGATTATGCAACGGAGAGAAAGGCATCGAAAAG
GAGCTCAACAGGAACATAGATGAAGTAGAACAAGAGACATCACAGGCTTCTGATAAGGAGACAGAGAAAG
AGAGCTGCGATGACAGCAACTCGTCGTTTAAAGTACCTGAAGACGGTTTTGAGAAAGAGATGATGGGTCT
CACCGGAGGTTTCCCCGGTGGCGAAAAAGGACTCAAAACGTTTATCGAACAAAACCCACCACCACCACCA
CCTCCTACGAAACAAGGAGGCGATGTTGCAGCCATGGTTGGTATGGAGAAGAAGCCTAAAGCTCCGGAAC
TACCGCTCCAAAAAACAAAAAGCATTAATAGGGATTAG
Upstream Sequence
GATATGTGGTCATTATAGCAGCAAGGCCTTCTTCCTATCTTTCCTTACTTCACCTCAAAACTTTTCTTTG
TCTAATGGCGACTTCTTCGATCACTATACCAACCATTATTCAGGGAACCAAGTTTCTCGGCCAAACCCAT
CTACTTTCAACTCCTAACCGATCGGTTTTCTCGCCTCCGAAGCAGCAACCAAACGCTCATAAAGTAAAGG
CCATGGCTAAGTTCAACCTATGGGAAATGATGGGAGGAAGAGGATTATGCAACGGAGAGAAAGGCATCGA
AAAGGAGCTCAACAGGAACATAGATGAAGTAGAACAAGAGACATCACAGGCTTCTGATAAGGAGACAGAG
AAAGAGAGCTGCGATGACAGCAACTCGTCGTTTAAAGTACCTGAAGACGGTTTTGAGAAAGAGATGATGG
GTCTCACCGGAGGTTTCCCCGGTGGCGAAAAAGGACTCAAAACGTTTATCGAACAAAACCCACCACCACC
ACCACCTCCTACGAAACAAGGAGGCGATGTTGCAGCCATGGTTGGTATGGAGAAGAAGCCTAAAGCTCCG
GAACTACCGCTCCAAAAAACAAAAAGCATTAATAGGGATTAG
Downstream Sequence
GAATGCATTCGATCAATGGTGAATCAGTATAATAGAAAAATCATCCAAGTCTGCAATGGA
GTTGTTTTTTTTTTATTCTGTCATTGACATGCTGAGTTTATTACTATATAATAAACCAAA
TCTTGACTCTTGAGTATATTCTGTGAATGGCAAAGAAGAGAAGAGGTCCACCATTTCATG
TTGTAATGATCAGATGCAGCCTCCCAACTGTGAATATTTGAAATGGTTAAAGAGACTTTA
TTTTAAAATGTTAATTATTATCCAGCAAGTTACTTACGAGTATGGCTTCCATTTCTTGGT
TAGAGACCGGAGTGCGCTTAGGCTGCAGAGACGCCTTCCCGCCTATAGTCTTTGGAGTGT
TGAGATTGGAGAAGAAAAACGCATCAGCTTCATTCTCCACCTGCTGCTGCTTTGTGCCCT
CTGTTATTTCAAAAAAGGTTTTATAAAACTTTAAATGCTAACATATATTACTACAAGTAA
AACTGCCATAACAAAAGAACTTGTAGTACAATGATTCAAGAAATGATTCGAAGCTTAAAT
CTAATGTGAATTTTTTATTCAATGATATGTGCAAATGTAGACGAAACATGGATATATTTC
TGCATAGAGTTTCAAAAGATGATTTCAAACCTGAAGGTTTGACATGACGCTGAGGGAATT
TGATGCGAGGGATCCTCTTAAGCCCCTGAACTACGTTGTTCATCTCTTTCGCTCTTCCTT
CTCGTCCTCCGTACCGAGGTTTGACGGCGACTTTGTAAATTTTCTATGTTTCTCTTCTGT
GTCCGTTCTTCTTTGAAGTTTGAACCTTCGGCTTTGTTTTTTATTTTCTACGATCCTGGG
CCTTTTACGATGGTTAGGCCCCCCCAAGCATACGGCCTGTTTAGAAGCCCTTGTTTTTTC
CGATGTTCGGAATCGATTCCAGTCAATGTTCATGTAGCTTATTCTTTTATGCAACTGTGG
AACAGATCACAGAAATAGGTAATTTAGCTATTGAAAACAATTTTTATAGTGTTTCTATAA
AATAATGTACTATTATACTTTAGACTGACATTATAAGATTTGTATTTTGGGGGTAAATAG
TTTTATACTTTTCCTAAGATAAATAGTGGTATCTCTATAATTAGAAGTCATTTTCTATGT
GTAGCTTTCTCGTTAACTCTTACGATGGTTGATTCTGATACTCTTAATGAATTAAAAGTA
TTACATTAAAAATTCTATTATTTATTTTTTATTTAGTTTCCTTTTAAAAAAGAATAAGAA
TTTTTTTATAAATTAAAAAAGAAATTGAAAAACGAAAATATATATATATATATATATATA
TATATATATATAATATGATTTCATAAAAAAGGAAAAGTTCACAAAATAGTAATATTACAT
TTAAAACTTTTTTTAAATAACATAAAATATAGATATAAAGAAAGTATTTTATTACTTTAA
AAGTATATTTTATTTTATTTAAAAAAAAAAAAAAATTTAATATTATTTTAAAAATTAGTT
TTCTATTTGTAGTTTTTTTGTTAAATCTTACAATGGTTTACTACACTGATAACCTTAATG
AATTAAAAGTATTACATTTAAAATTCTATTATTTATTTATTTATTTAGTTTCCTTTTTAA
AATTTTCCAAAAACATATACATATAATAAAAAAAAATTATAAATTAAAAAAAAAGGAATT
GAAAAACGAAAAAAATATATATATATATATATATATATATATATATAATATGATTTCATA
AAAAAGGAAAAGTTCACAAAATAGTAATACTACATTTAAAACTTTTTTTTAAATAACATA
AAATATACTTTTAAAGTAATAAAATAGTTTCTTTATATCTATATTTTCTTAGATGAAAAA
TATAAATTTGTATATAATGTGATTTCATTAAAAAAACAATTTACACAGATTATCTTGATA
TTAGAAAAGAAATATTATTTCTTTTAAAACATAATTTTAAACAATACAAATAAATTCAAA
GTAATAGAAATATTTTTAAA
Pro Sequence
MATSSITIPTIIQGTKFLGQTHLLSTPNRSVFSPPKQQPNAHKVKAMAKF
NLWEMMGGRGLCNGEKGIEKELNRNIDEVEQETSQASDKETEKESCDDSN
SSFKVPEDGFEKEMMGLTGGFPGGEKGLKTFIEQNPPPPPPPTKQGGDVA
AMVGMEKKPKAPELPLQKTKSINRD
mRNA Sequence
GATATGTGGTCATTATAGCAGCAAGGCCTTCTTCCTATCTTTCCTTACTTCACCTCAAAACTTTTCTTTG
TCTAATGGCGACTTCTTCGATCACTATACCAACCATTATTCAGGGAACCAAGTTTCTCGGCCAAACCCAT
CTACTTTCAACTCCTAACCGATCGGTTTTCTCGCCTCCGAAGCAGCAACCAAACGCTCATAAAGTAAAGG
CCATGGCTAAGTTCAACCTATGGGAAATGATGGGAGGAAGAGGATTATGCAACGGAGAGAAAGGCATCGA
AAAGGAGCTCAACAGGAACATAGATGAAGTAGAACAAGAGACATCACAGGCTTCTGATAAGGAGACAGAG
AAAGAGAGCTGCGATGACAGCAACTCGTCGTTTAAAGTACCTGAAGACGGTTTTGAGAAAGAGATGATGG
GTCTCACCGGAGGTTTCCCCGGTGGCGAAAAAGGACTCAAAACGTTTATCGAACAAAACCCACCACCACC
ACCACCTCCTACGAAACAAGGAGGCGATGTTGCAGCCATGGTTGGTATGGAGAAGAAGCCTAAAGCTCCG
GAACTACCGCTCCAAAAAACAAAAAGCATTAATAGGGATTAG