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Detail for ZS11_A02G48960.t1

Genome:
ZS11: ZS11_A02G48960.t1
ZS11_v0: BnaA02T0411700ZS
WE: WE_C02G71520.t1
WE_v0: BnaA02T0402700WE
Darmor: A02p43720.1_BnaDAR
BH: BnaA02T494000BH
Quinta: BnaC02T0510000QU
ZS2: BnaA02T428200ZS2
SW: BnaA02T440600SW
Express61: C02p042100.1_BnaEXP
Xiaoyun: BnaC02G0552000XY
P202: BnaA02G032930P202.2
BL: BnaA02T494000BH
TA: BnaC02T545600TA
Da-Ae: Not available
RB: BnaA02T421400RB
No2127: BnaA02T0402500NO
P130: BnaA02G043960P130.1
Length: 306
KOG ID: KOG3049
KOG E-value: 7.100000e-111
KOG Score: 323.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0006099(tricarboxylic acid cycle)
Cellular Component: -
Molecular Function: GO:0051536(iron-sulfur cluster binding),GO:0009055(electron transfer activity),GO:0016491(oxidoreductase activity)
KEGG Ortholog: K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]
NR Protein: XP_013675434.1
NR E-value: 6.300000e-179
NR Score: 631.7
NR Annotation: XP_013675434.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial [Brassica napus]
SwissProt Protein: Q9FJP9|SDHB3_ARATH
SwissProt E-value: Not available
SwissProt Score: 568.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-3 PE=1 SV=1
CDS Sequence (934 bp)
ATGTTACGGTTGCTGCAGCGGAGAATCTGCAGCCAAGCGGCGGAGAAAGTACGTTTGAGCAGCAGTTTAA
GTGGCAACGGAGATTTTCCCATCTTAAAAGGTCACAAAGCGGCTCAGGACTTGTCCAAAGATACTCTAAA
GTCCCATGAAACAATCAAAGACAAAGAAGGCCAACACAAAGTGGCCAAGAAGGAGTTCAAGATTTACAGA
TGGAACCCTGATAAGCCAAATACTAAACCCTTTCTTCAATCATTTTTCGTTGATGTTTCCACTTGTGGCC
CCATGGTTTTGGACGTCTTACAGAAGATAAAAGCAGAGGAAGATCCGAGTTTGAGTTACCGAAGATCATG
CAGAGAAGGGATATGTGGATCTTGCTCGATGAACATTGACGGTACTAATACTGTTGCATGTCTTAAACCT
ATAAACTCCGACACGTCTAAGCCAACCATAATCACTCCTTTACCACACATGTACGTCATCAAAGATCTAG
TCATCGACCTCACTAATTTTTACCAGCAATACAAATCAGTCGAGCCATGGTTAAAGACGAGGAAGCCGCC
TAAAGACGGACGCGAACACCTTCAATCACCAAACGACCGTAAGAAACTAGACGGGTTGTACGAATGCATA
CTTTGTGCATGTTGTACCACGTCATGTCCTTCTTATTGGTGGAATCCTGAGGAGTTTCCAGGTCCTGCGA
CTTTACTACAGGCTTACCGCTGGATCAGTGACAGCCGCGATGAGTTTAGAGAAGAGAGGTTACAAGCAAT
AACAGAGGATGAAAGGAAAGTGTATAGATGCAGAGCAATCAAAAATTGTACGGCCACTTGTCCTAAAGGA
CTTAACCCAGCTAGTGCCATCTTGAAGATGAAGGCTAAGCATTCGCTCCCAGATCCGGTCAAGAGAATTG
AGAGAGCCTAG
Upstream Sequence
GTCTCTTCTCCTCGCCATGCTAGTTTCACTCTCATTCCTTCCAAAAACTAATTAAAAACCCTTCAATAAC
ATCTTTTGATCAAGCGAGCAGAGATGTTACGGTTGCTGCAGCGGAGAATCTGCAGCCAAGCGGCGGAGAA
AGTACGTTTGAGCAGCAGTTTAAGTGGCAACGGAGATTTTCCCATCTTAAAAGGTCACAAAGCGGCTCAG
GACTTGTCCAAAGATACTCTAAAGTCCCATGAAACAATCAAAGACAAAGAAGGCCAACACAAAGTGGCCA
AGAAGGAGTTCAAGATTTACAGATGGAACCCTGATAAGCCAAATACTAAACCCTTTCTTCAATCATTTTT
CGTTGATGTTTCCACTTGTGGCCCCATGGTTTTGGACGTCTTACAGAAGATAAAAGCAGAGGAAGATCCG
AGTTTGAGTTACCGAAGATCATGCAGAGAAGGGATATGTGGATCTTGCTCGATGAACATTGACGGTACTA
ATACTGTTGCATGTCTTAAACCTATAAACTCCGACACGTCTAAGCCAACCATAATCACTCCTTTACCACA
CATGTACGTCATCAAAGATCTAGTCATCGACCTCACTAATTTTTACCAGCAATACAAATCAGTCGAGCCA
TGGTTAAAGACGAGGAAGCCGCCTAAAGACGGACGCGAACACCTTCAATCACCAAACGACCGTAAGAAAC
TAGACGGGTTGTACGAATGCATACTTTGTGCATGTTGTACCACGTCATGTCCTTCTTATTGGTGGAATCC
TGAGGAGTTTCCAGGTCCTGCGACTTTACTACAGGCTTACCGCTGGATCAGTGACAGCCGCGATGAGTTT
AGAGAAGAGAGGTTACAAGCAATAACAGAGGATGAAAGGAAAGTGTATAGATGCAGAGCAATCAAAAATT
GTACGGCCACTTGTCCTAAAGGACTTAACCCAGCTAGTGCCATCTTGAAGATGAAGGCTAAGCATTCGCT
CCCAGATCCGGTCAAGAGAATTGAGAGAGCCTAGCCATACCATTACTCGGTCCTGTCCGGTTATTATGTA
ATAAAAAGCTTTTATATCTGGCTATACGTGTGTTTCTGGACTATTTTCTATTTATATAACTTTATCAGAA
CACGCTTTGTTTTGTTTTTTTTTTTTGAAAAATGAACACGCTTTGTTACATCGAAGGAAATATAATATAT
CTACGTGC
Downstream Sequence
GGTATGATGAATAAACCGAAACTTTGGTTTTTTTTTTTTTTGAACAATTTAAAAACCGAT
ACTTTTGTAAAAGCAAATTTTAAGGTTTTTATAGACGCAATATTGTTTTATAGAAttata
tataaaattAATTGATAACAGGCCAACACAAAGTGGCCAAGAAGGAGTTCAAGATTTACA
GATGGAACCCTGATAAGCCAAATACTAAACCCTTTCTTCAATCATTTTTCGTTGATGTTT
CCACTTGTGGCCCCATGGTAATTTACTACAGTTATTGGTTACTAATTAGTTCCATAGGAT
TACTTTGAATTTTGGAGGGCTTCGGTTCTTGGATAACGAGGTGTGTTTCGTTAGGTTTTG
GACGTCTTACAGAAGATAAAAGCAGAGGAAGATCCGAGTTTGAGTTACCGAAGATCATGC
AGAGAAGGGATATGTGGATCTTGCTCGATGAACATTGACGGTACTAATACTGTTGCATGT
CTTAAACCTATAAACTCCGACACGTCTAAGCCAACCATAATCACTCCTTTACCACACATG
TACGTCATCAAAGATCTAGTCATCGACCTCACTAATTTTTACCAGCAATACAAGTAAGTA
AACCTCCCTTCTTTTTATATCTCTTATTGGTTTCTCGCTGCTTCCATATTCTGGCATGTG
TTGGTAATATTGGTTATATATTTTGACCTAAATATTGGAAAATAAACCACAAAATGATAG
AACTATCCGTGTATTTAAAATGAAACTCTATACACTTCTATCCTCTACGTGACACTTCAT
GCATGTTATTGTGTTGTGTTTAGATCAGTCGAGCCATGGTTAAAGACGAGGAAGCCGCCT
AAAGACGGACGCGAACACCTTCAATCACCAAACGACCGTAAGAAACTAGACGGGTTGTAC
GAATGCATACTTTGTGCATGTTGTACCACGTCATGTCCTTCTTATTGGTGGAATCCTGAG
GAGTTTCCAGGTCCTGCGACTTTACTACAGGCTTACCGCTGGATCAGTGACAGGTTAAAT
AAAATATTCAATACATTCTATTCAAACTAGAATAGAAAATCGAAGATTAACAGTCATAAT
TCATATCGATCTCTAACATAGATTTATGTTGTACTTTGGTTTAACGCAGCCGCGATGAGT
TTAGAGAAGAGAGGTTACAAGCAATAACAGAGGATGAAAGGAAAGTGTATAGATGCAGAG
CAATCAAAAATTGTACGGCCACTTGTCCTAAAGGACTTAACCCAGCTAGTGCCATCTTGA
AGATGAAGGCTAAGCATTCGCTCCCAGATCCGGTCAAGAGAATTGAGAGAGCCTAGCCAT
ACCATTACTCGGTCCTGTCCGGTTATTATGTAATAAAAAGCTTTTATATCTGGCTATACG
TGTGTTTCTGGACTATTTTCTATTTATATAACTTTATCAGAACACGCTTTGTTTTGTTTT
TTTTTTTTGAAAAATGAACACGCTTTGTTACATCGAAGGAAATATAATATATCTACGTGC
TTTCCATAAAAAAACATATAAAATGGATTCAATCGGTGAAAAAGACGGACTAATTATTTT
CGGACAAATAGTCTTTTGAATTCACCACTTGGAAGAGATGAACAAAATTAGAGTTTAAGA
CTGATCTACAATCAAGATATGGATGAACATCTTATAAGTTATAATCACTCAATATCAAGC
ATTGTATATAACATATTTGTTTTCATTCTTTTATTTTTTAAAAGCAGGAAATCTTAATCA
CACTCGAATTAAATATATGATCACGTCATGTTTCATTGACAACCCCACCAGAATAAATAA
ATAACACACTCACATCGTGGAAACGACTCATCGATTCTTGACAGAGTCCGAACATTGATT
CCTAATGGCCGACAGCTCATATGGCGAAGTATCACGAGCCAACCATTGCTCCACCGTGAA
TTTCTCCTGAGAACAACTTCTCTTACGACTCTCACTCATCGTCACTTCAACGTAGTTACA
ATACCAACCGTGGTGATCGC
Pro Sequence
MLRLLQRRICSQAAEKVRLSSSLSGNGDFPILKGHKAAQDLSKDTLKSHE
TIKDKEGQHKVAKKEFKIYRWNPDKPNTKPFLQSFFVDVSTCGPMVLDVL
QKIKAEEDPSLSYRRSCREGICGSCSMNIDGTNTVACLKPINSDTSKPTI
ITPLPHMYVIKDLVIDLTNFYQQYKSVEPWLKTRKPPKDGREHLQSPNDR
KKLDGLYECILCACCTTSCPSYWWNPEEFPGPATLLQAYRWISDSRDEFR
EERLQAITEDERKVYRCRAIKNCTATCPKGLNPASAILKMKAKHSLPDPV
KRIERA
mRNA Sequence
GTCTCTTCTCCTCGCCATGCTAGTTTCACTCTCATTCCTTCCAAAAACTAATTAAAAACCCTTCAATAAC
ATCTTTTGATCAAGCGAGCAGAGATGTTACGGTTGCTGCAGCGGAGAATCTGCAGCCAAGCGGCGGAGAA
AGTACGTTTGAGCAGCAGTTTAAGTGGCAACGGAGATTTTCCCATCTTAAAAGGTCACAAAGCGGCTCAG
GACTTGTCCAAAGATACTCTAAAGTCCCATGAAACAATCAAAGACAAAGAAGGCCAACACAAAGTGGCCA
AGAAGGAGTTCAAGATTTACAGATGGAACCCTGATAAGCCAAATACTAAACCCTTTCTTCAATCATTTTT
CGTTGATGTTTCCACTTGTGGCCCCATGGTTTTGGACGTCTTACAGAAGATAAAAGCAGAGGAAGATCCG
AGTTTGAGTTACCGAAGATCATGCAGAGAAGGGATATGTGGATCTTGCTCGATGAACATTGACGGTACTA
ATACTGTTGCATGTCTTAAACCTATAAACTCCGACACGTCTAAGCCAACCATAATCACTCCTTTACCACA
CATGTACGTCATCAAAGATCTAGTCATCGACCTCACTAATTTTTACCAGCAATACAAATCAGTCGAGCCA
TGGTTAAAGACGAGGAAGCCGCCTAAAGACGGACGCGAACACCTTCAATCACCAAACGACCGTAAGAAAC
TAGACGGGTTGTACGAATGCATACTTTGTGCATGTTGTACCACGTCATGTCCTTCTTATTGGTGGAATCC
TGAGGAGTTTCCAGGTCCTGCGACTTTACTACAGGCTTACCGCTGGATCAGTGACAGCCGCGATGAGTTT
AGAGAAGAGAGGTTACAAGCAATAACAGAGGATGAAAGGAAAGTGTATAGATGCAGAGCAATCAAAAATT
GTACGGCCACTTGTCCTAAAGGACTTAACCCAGCTAGTGCCATCTTGAAGATGAAGGCTAAGCATTCGCT
CCCAGATCCGGTCAAGAGAATTGAGAGAGCCTAGCCATACCATTACTCGGTCCTGTCCGGTTATTATGTA
ATAAAAAGCTTTTATATCTGGCTATACGTGTGTTTCTGGACTATTTTCTATTTATATAACTTTATCAGAA
CACGCTTTGTTTTGTTTTTTTTTTTTGAAAAATGAACACGCTTTGTTACATCGAAGGAAATATAATATAT
CTACGTGC