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Detail for ZS11_C08G52500.t1

Genome:
ZS11: ZS11_C08G52500.t1
ZS11_v0: BnaC08T0466700ZS
WE: WE_A09G61000.t1
WE_v0: BnaC08T0415200WE
Darmor: C08p43060.1_BnaDAR
BH: BnaA09T597800BH
Quinta: BnaA09T0588100QU
ZS2: BnaC08T435800ZS2
SW: BnaA09T576900SW
Express61: Not available
Xiaoyun: BnaC08G0457100XY
P202: BnaC08G070290P202.1
BL: BnaA09T597800BH
TA: BnaA09T514200TA
Da-Ae: Not available
RB: BnaA09T549400RB
No2127: BnaA09T0544600NO
P130: BnaA09G054340P130.1
Length: 176
KOG ID: -
KOG E-value: Not available
KOG Score: Not available
KOG Annotation: -
Biological Process: GO:0009773(photosynthetic electron transport in photosystem I)
Cellular Component: GO:0009535(chloroplast thylakoid membrane),GO:0010598(NAD(P)H dehydrogenase complex (plastoquinone))
Molecular Function: -
KEGG Ortholog: -
NR Protein: XP_022564062.1
NR E-value: 1.400000e-85
NR Score: 320.9
NR Annotation: XP_022564062.1 photosynthetic NDH subunit of subcomplex B 4, chloroplastic-like [Brassica napus]
SwissProt Protein: Q8RXS1|PNSB4_ARATH
SwissProt E-value: 4.260000e-100
SwissProt Score: 288.0
SwissProt Annotation: Photosynthetic NDH subunit of subcomplex B 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSB4 PE=2 SV=1
CDS Sequence (538 bp)
ATGGCTGAAGCATTCACCTTCACAAACCTTCATGTCCCGTCTTACTCGAGTTACTCGGGGTTGGTTTTTT
TTGCTGTGTACCCTAAGCAGTTTTCAGGGACAACTCACGGATGGCAATCTATGAAACAGAATGAGAAGAG
GGAAAAGAATGTGATGAGAGGAAGCTTATGTGTAAGAAAGGCATTGCCACATGATTTGCCACTAATGGCT
GTGATGGTTCAACAAATTGAAGGGATGCGTGATATCATTACAGAGAAACACGTGTGGCATCTAAAGCCCT
GTTCGTTTGATTTGTTCTACATCATGTTCACTTGTTGGGGATGCCTGTACTTTGGTTCCGCAAAAGATCC
ATTCTATGACTCGGAGGAGTACCGTGGAGATGGAGGTGATGGAACCGGATATTGGGTCTATGAAACTCAA
GAAGACATAGAAGAGAAAGCAAGAGCAGAGTTATGGCGTGAAGAACTTATCGAAGAAATTGAACAGAAAG
TTGGTGGGTTAAGAGAGCTCGAAGAAGCTGTTACCAAGTAG
Upstream Sequence
ATGGCTGAAGCATTCACCTTCACAAACCTTCATGTCCCGTCTTACTCGAGTTACTCGGGGTTGGTTTTTT
TTGCTGTGTACCCTAAGCAGTTTTCAGGGACAACTCACGGATGGCAATCTATGAAACAGAATGAGAAGAG
GGAAAAGAATGTGATGAGAGGAAGCTTATGTGTAAGAAAGGCATTGCCACATGATTTGCCACTAATGGCT
GTGATGGTTCAACAAATTGAAGGGATGCGTGATATCATTACAGAGAAACACGTGTGGCATCTAAAGCCCT
GTTCGTTTGATTTGTTCTACATCATGTTCACTTGTTGGGGATGCCTGTACTTTGGTTCCGCAAAAGATCC
ATTCTATGACTCGGAGGAGTACCGTGGAGATGGAGGTGATGGAACCGGATATTGGGTCTATGAAACTCAA
GAAGACATAGAAGAGAAAGCAAGAGCAGAGTTATGGCGTGAAGAACTTATCGAAGAAATTGAACAGAAAG
TTGGTGGGTTAAGAGAGCTCGAAGAAGCTGTTACCAAGTAG
Downstream Sequence
GGTCCATATTTAACTATGTTCATATACAGCCAAGTGTTTCATCATTTATATTAGAAAAAA
ATATACTAAGAAAGGGGTTGGTTTTTTTTGCTGTGTACCCTAAGCAGTTTTCAGGGACAA
CTCACGGATGGCAATCTGTGAGTCTCTAATTTAAAAATCTGATTGCTCTTGTTATGAATT
TTACGTTTTATAATTCTGAAAAACAACTAGATGAAACAGAATGAGAAGAGGGAAAAGAAT
GTGATGAGAGGAAGCTTATGTGTAAGAAAGGCATTGCCACATGATTTGCCACTAATGGCT
GTGATGGTTCAACAAATTGAAGGGATGCGTGATATCATTACAGAGAAACACGTGTGGCAT
CTAAAGCCCTGTTCGTTTGGTTGCCGCAGGTTTTGGCGTCAGCGGCAGCGTCTGCGTCGG
CGGCGGCAGCAGCGTCAATGAAAACAGTTGTTGTTCGTTTCGCAGACGCTGACGCTGACG
CTGCCGCAGATTATTGTTCGTTTAGAAGACGCACGAAGTTGAGGTCGACGCCGACGCTGC
CGCAGGAAGCAGATTTTTGGGTTGTTCGTTTGACAGACGCAGCGGCTATTTTCATTTTTT
CAGATTTATTTTAATTTTTTTATAAAATTGTATTTAAATAAATCAAGTGTAGTTTAAACA
TATTTACATCCATTAAAATATTATGTTTACTTGATAATAATTTTTTGGTCAATTATACAA
ATGTAAATTATACAAATGTAACAATTTTTTTTCATACATCATAAGCTAAATTAGAAACAA
AATAATAATTCAAAATATTTATTATAAACAAAAGCTAAATATTACATCAAGTCTTAAATA
AATATCACATTTACATGACAATCAAAGTTATAAGCaaaaaaTTAAATCATCAACTAAAAC
ATTTAATACGGTAAACGACCTCTACCATATTCATTTGTGATGTTATCACGCAAATCTTCC
ATCGCTCTATCACCTGTCGGCTCATATACAATACGTCCACCACCACCACCACCACCACCA
CCACCATCATCTTTTTCATCATCATCATCATCATCACCTTCTTCTTCATCACCGTCACTA
TCAGCTTCTCCTTTTCCATCATCACCATTTTGCCACTGTACAAAATCGTGATCTTCCCGA
TTAAGACTAGTGTGAGAGAAACTTACATCTTTTGACGTCGACATCTTAAAAAGTGAGAGG
AACAGCAGTAGAGAGTGAGTTTGAGAGGGTCTGAGCTTGAGAGAATGAGCTTGAGAAGAT
CTGAGTCTGCAAATCCAAAAAAAAGAGAATAAGCAATGtgttcacgcttttggaacaagt
agtaaaatatatttgcacttgttagtcaccttttccactaggtccgagCAAACCTGAGAT
CAATGGAGCCTGAAATGAGAGAGCCTGCAAAAAGATGCAGAGAAATGGAGCTTATGATCA
ATGAATCAAAACACATAAGATCTTATGATCAATAAATACTTTATAAATTTTAAACAAATA
TGGAAGAAAAGCATAAATAAAAATCAttcacaatccacagtttgaagcatacgttgagtg
ttccctaaacacacacaaattatgaaaaattgaaaaatcAAGTCAAGCCGTCTACTTTCT
CCAAATAAGACCAAACAACGTTCCAACAATGTTCCAGGAAACAGAAACAATTTAACTTCT
ACTTGACTCGGCATATGTTAACTTCTTAAAACAATTTAATACTAAGAAGCAACCCTTTAA
GCTTCCCCATGAGTGCAGACTCGTAAACCAATACGTACTAACTACAATAGGATGTTTTTG
TAGCCTGCACTTTAAATTTAGAAACCCCAAAAGCTACACTCAGAAGACAACCCATCGTTT
ATATTAAAAGAACAGACCAGCAATGGAACCATGAAGGTAAAGAAAGGGAGTTACAGCTAG
GCCTCTTTCACAATGAAACCAAAGATATATCACAAAAAGACTCACtagggagcatcaaac
aatcatcgagattcaaaTAA
Pro Sequence
MAEAFTFTNLHVPSYSSYSGLVFFAVYPKQFSGTTHGWQSMKQNEKREKN
VMRGSLCVRKALPHDLPLMAVMVQQIEGMRDIITEKHVWHLKPCSFDLFY
IMFTCWGCLYFGSAKDPFYDSEEYRGDGGDGTGYWVYETQEDIEEKARAE
LWREELIEEIEQKVGGLRELEEAVTK
mRNA Sequence
ATGGCTGAAGCATTCACCTTCACAAACCTTCATGTCCCGTCTTACTCGAGTTACTCGGGGTTGGTTTTTT
TTGCTGTGTACCCTAAGCAGTTTTCAGGGACAACTCACGGATGGCAATCTATGAAACAGAATGAGAAGAG
GGAAAAGAATGTGATGAGAGGAAGCTTATGTGTAAGAAAGGCATTGCCACATGATTTGCCACTAATGGCT
GTGATGGTTCAACAAATTGAAGGGATGCGTGATATCATTACAGAGAAACACGTGTGGCATCTAAAGCCCT
GTTCGTTTGATTTGTTCTACATCATGTTCACTTGTTGGGGATGCCTGTACTTTGGTTCCGCAAAAGATCC
ATTCTATGACTCGGAGGAGTACCGTGGAGATGGAGGTGATGGAACCGGATATTGGGTCTATGAAACTCAA
GAAGACATAGAAGAGAAAGCAAGAGCAGAGTTATGGCGTGAAGAACTTATCGAAGAAATTGAACAGAAAG
TTGGTGGGTTAAGAGAGCTCGAAGAAGCTGTTACCAAGTAG