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Detail for ZS11_C09G03750.t1

Genome:
ZS11: ZS11_C09G03750.t1
ZS11_v0: BnaC09T0024400ZS
WE: WE_C09G03820.t1
WE_v0: BnaC09T0029700WE
Darmor: C09p03600.1_BnaDAR
BH: BnaA09T029500BH
Quinta: BnaC09T0030700QU
ZS2: BnaC09T025200ZS2
SW: BnaA09T054100SW
Express61: C09p003040.1_BnaEXP
Xiaoyun: BnaC09G0030800XY
P202: BnaC09G003470P202.1
BL: BnaA09T029500BH
TA: BnaA09T026700TA
Da-Ae: Not available
RB: BnaA09T032300RB
No2127: BnaA09T0036300NO
P130: BnaC09G001450P130.1
Length: 360
KOG ID: KOG3049
KOG E-value: 9.660000e-171
KOG Score: 478.0
KOG Annotation: Energy production and conversion
Biological Process: GO:0006099(tricarboxylic acid cycle)
Cellular Component: -
Molecular Function: GO:0016491(oxidoreductase activity),GO:0009055(electron transfer activity),GO:0051536(iron-sulfur cluster binding)
KEGG Ortholog: K00235 SDHB, SDH2; succinate dehydrogenase (ubiquinone) iron-sulfur subunit [EC:1.3.5.1]
NR Protein: XP_013695383.1
NR E-value: 3.000000e-143
NR Score: 513.5
NR Annotation: XP_013695383.1 succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial-like [Brassica napus]
SwissProt Protein: Q8LBZ7|SDHB1_ARATH
SwissProt E-value: 4.100000e-170
SwissProt Score: 478.0
SwissProt Annotation: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH2-1 PE=1 SV=2
CDS Sequence (1098 bp)
ATGGCGTCCGGTTTAATCGGAAGATTAGTTAGAACCAAACCGGCGAAATTAACCTCAACGGCGAGGTTGA
TCCCGTCGCGATGTACATCATCCGCAACGGAATCAAAACCTTCGTCCGGCGGCGGCGGCGGCGGGAGAGG
ATCGAACCTGAAGACGTTCCAGATCTACCGGTGGAACCCCGATAGCCCCGGCAAGCCTGAGCTCCAAGAC
TACCAGATCGATCTCAAGGACTGTGGCCCGGGGGGTCGAGAGGCGCGGATCAAGAGCAAAAACGAGATGG
ATCCGTCGCTCACCTTCCGCCGCTCCTGCCGCGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGG
GTGCAACGGGCTCGCGTGTCTGACGAAGATCGAAGGCGGCGGCGGAGCTGCTAAAGAGACGACGATCACT
CCCTTGCCGCATATGTTCGTGATCAAGGATCTGGTGGTGGACATGACGAATTTTTATAATCAGTACAAGA
GTATCGAGCCGTGGCTGAAGAGGAAGAGTCCGGCGTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAA
GGATAGGGCTAAGCTTGATGGGATGTATGAGTGTATTCTCTGTGCGTGTTGTAGCACGTCGTGTCCTAGT
TACTGGTGGAACCCTGAGTCTTACCTTGGCCCTGCCGCTTTGCTACACGCAAACAGGTGGATAAGCGACA
GTCGGGATGAGTACACAAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATAC
AATCTTGAACTGTGCCCGTGCCTGTCCAAAGGATGATGCTGCCATTTCAAGTCCTTATCTTAATGAAGAG
ATGAAAGATGTAGAGGCCATAATCAAAGAAGCGGAACCAGTTGAGCCATCTTCAGAGCCAGTCACGACTC
TGATCAATACTGTCTCCACCACCAGACAAACATTTCTCCCAAACTTGTGCACTATTTTGCCTCCGGTCGA
GATCTCTTGTCGTTTTCTTTGTCTTTCTGATCTTTTTCTTTTCCTCCGTTTGTTTTGCGTGTTTTTGTGT
TTCGTGGTAGCTGTTGCACGTGTGAGAGTGTGA
Upstream Sequence
ATGGCGTCCGGTTTAATCGGAAGATTAGTTAGAACCAAACCGGCGAAATTAACCTCAACGGCGAGGTTGA
TCCCGTCGCGATGTACATCATCCGCAACGGAATCAAAACCTTCGTCCGGCGGCGGCGGCGGCGGGAGAGG
ATCGAACCTGAAGACGTTCCAGATCTACCGGTGGAACCCCGATAGCCCCGGCAAGCCTGAGCTCCAAGAC
TACCAGATCGATCTCAAGGACTGTGGCCCGGGGGGTCGAGAGGCGCGGATCAAGAGCAAAAACGAGATGG
ATCCGTCGCTCACCTTCCGCCGCTCCTGCCGCGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGG
GTGCAACGGGCTCGCGTGTCTGACGAAGATCGAAGGCGGCGGCGGAGCTGCTAAAGAGACGACGATCACT
CCCTTGCCGCATATGTTCGTGATCAAGGATCTGGTGGTGGACATGACGAATTTTTATAATCAGTACAAGA
GTATCGAGCCGTGGCTGAAGAGGAAGAGTCCGGCGTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAA
GGATAGGGCTAAGCTTGATGGGATGTATGAGTGTATTCTCTGTGCGTGTTGTAGCACGTCGTGTCCTAGT
TACTGGTGGAACCCTGAGTCTTACCTTGGCCCTGCCGCTTTGCTACACGCAAACAGGTGGATAAGCGACA
GTCGGGATGAGTACACAAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATAC
AATCTTGAACTGTGCCCGTGCCTGTCCAAAGGATGATGCTGCCATTTCAAGTCCTTATCTTAATGAAGAG
ATGAAAGATGTAGAGGCCATAATCAAAGAAGCGGAACCAGTTGAGCCATCTTCAGAGCCAGTCACGACTC
TGATCAATACTGTCTCCACCACCAGACAAACATTTCTCCCAAACTTGTGCACTATTTTGCCTCCGGTCGA
GATCTCTTGTCGTTTTCTTTGTCTTTCTGATCTTTTTCTTTTCCTCCGTTTGTTTTGCGTGTTTTTGTGT
TTCGTGGTAGCTGTTGCACGTGTGAGAGTGTGA
Downstream Sequence
GGTGAGTTAAAGAATTGGAATGTGGTTCATTCCAAGTCTCTATTGTGGTTATTGGTGTGG
GGAGTTGATTTTTAACCGAGTTAACAGTTAAAAGTTTTGATTTTTCATTGTGTTTGTAAC
AATAATGGTAGAATCTGCTTTCAGAGTTTGCATGAATGGGTTGAAGATTCATGTATCTTG
TTGTTAGCTGCATTGGTTCCACTTATGTGGTTCATTCAAGTCTCTATTGTGGTAATTGGT
GTGGGAAGTTGATTTTAACCGAGTTAACAGTTAAAAGTTTTGATTTTTCATTGTGTTTGT
AACAATAATGGTAGAATCTGCTTTCAGAGTTTGCATGAACGGGTTGAAGACTCGTGTATC
TTGTTGTTAGCTGCATTGGTTCCACTTATGTGGTTCATTCCAAGTCTCTATTGTGGTCAT
TGGTGTGGGAAGTTGATTTTAACCGAGTTAACAGTTAAAAGTTTTGATTTTTCATTGTGT
TTGTAACAATAATGGTAGAATCTGCTTTCAGAGTTTGCATGAACGGGTTGAAGATTCGTG
TATCTTGTTGTTAGCTGCATTGGTTCCACTTATGTGGTTCATTCCAAGTCTACTTTGTTG
TTTGTTTTTTGAATCTATGTCTTTGTTGCGTGTTGGAAGTTGATTTTAACGGAGTTAAGT
AGACAAAGTTTTGATATTTAGATGTGTATGTAACAGAGATACTTGTTCACGTTATGCAGG
TGGATAAGCGACAGTCGGGATGAGTACACAAAGGAAAGACTTGAGGCTATTGACGACGAG
TTCAAGCTTTACCGTTGCCATACAATCTTGAACTGTGCCCGTGCCTGTCCAAAGGGTTTG
AACCCTGGCAAACAGATCGCACACATCAAGCAACTTCAGCGTTGAACAGCTTCTTTTATG
CATTTTTTTTTGTGGTACTCGTTGGGAAACCCATCATCACCCTTTTTAAAGTTTGAAGTT
AATAATCTTTCACAAAACTTTCGGCTTTTCTATTTGATTCTTGTATTGTTGTTGCCAAAA
ATTAGCACCTGTAAAGAAAACTCTTTTGCAAGACCTCCCACGTAGATGAGCTTTGTGGTT
GTATCTTGCTGATCTCTCTCTAAGTAATAAAACTCCAGAAAACTTCACATCATCTAGTCT
TTTGTGTTTTATCTCCATAGTCTTAATAAACATGTAATGCACTTGTATCTATGTTGTCTA
GAAGACTGACTATGAACAATATATTTGTTCTCAGCTATACAATACACTAACTATGAATAA
AGATAGGGGCTTTTAACAGAAGAGGAATCTGATGAGTTCTACTAGTAGCTCACACCCGCA
GACTATCACCGTCTTGTGGCAACTAAGAAAGAAGGTAACGATCTTCTCTGAGAAAAAAAG
ATAAATCCTTGAAGACAAGAAAACTCCGGGAAGCAGAAGAAGCTGCTCGTCGAGCTAAGC
TCACTAAGGTTCTTGTTTTAATCTTGTTTCCATGCTTGTGAAGTAGTTTTATCCCATTTG
ATACTATCTAGGCTGTGATCCGGGTTCGTTTTCCTGATAATCACACATTGGAGGCAACAT
TTCATCCCTCTGAAAAGCTCCAATCTTTGGCAGATCTGCTCAAAAGAGCACTTGCCCACA
CCCACAAGTTCCTTTCTTCTTGTGTATGTTTCCATTACTCTGGTTTCAAATTTACAATCC
TGAACATAGAAGAAACCTTATGAGATAGTACTTACTTTTGTAGACACGTACAACTCCTCC
CAAGAAGCAGATCAAGGATTTCTCACAAGACTTCTACTCTGCTGGGTTCATTCCTGGAGC
TATTCTCTACTTGGCAGACGATCTACCAAAAGGCTAGTTTACCGTCAATACCTTCACATG
GTACTAAAGGCTTTCTTCTTTCTCTGGGGAACTTATATGTATTGGGAGTAAGTGAGATTT
CTGTGAGAAATCAAGAACTGTCCTTGTGGAATTTTCGGAAAAGCTTGCAAACGTAAGCAT
AGAATTCGCCCGGTGAATAC
Pro Sequence
MASGLIGRLVRTKPAKLTSTARLIPSRCTSSATESKPSSGGGGGGRGSNL
KTFQIYRWNPDSPGKPELQDYQIDLKDCGPGGREARIKSKNEMDPSLTFR
RSCREGICGSCAMNIDGCNGLACLTKIEGGGGAAKETTITPLPHMFVIKD
LVVDMTNFYNQYKSIEPWLKRKSPASEPGKEILQSKKDRAKLDGMYECIL
CACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEF
KLYRCHTILNCARACPKDDAAISSPYLNEEMKDVEAIIKEAEPVEPSSEP
VTTLINTVSTTRQTFLPNLCTILPPVEISCRFLCLSDLFLFLRLFCVFLC
FVVAVARVRV
mRNA Sequence
ATGGCGTCCGGTTTAATCGGAAGATTAGTTAGAACCAAACCGGCGAAATTAACCTCAACGGCGAGGTTGA
TCCCGTCGCGATGTACATCATCCGCAACGGAATCAAAACCTTCGTCCGGCGGCGGCGGCGGCGGGAGAGG
ATCGAACCTGAAGACGTTCCAGATCTACCGGTGGAACCCCGATAGCCCCGGCAAGCCTGAGCTCCAAGAC
TACCAGATCGATCTCAAGGACTGTGGCCCGGGGGGTCGAGAGGCGCGGATCAAGAGCAAAAACGAGATGG
ATCCGTCGCTCACCTTCCGCCGCTCCTGCCGCGAAGGGATCTGCGGCTCGTGCGCGATGAACATCGACGG
GTGCAACGGGCTCGCGTGTCTGACGAAGATCGAAGGCGGCGGCGGAGCTGCTAAAGAGACGACGATCACT
CCCTTGCCGCATATGTTCGTGATCAAGGATCTGGTGGTGGACATGACGAATTTTTATAATCAGTACAAGA
GTATCGAGCCGTGGCTGAAGAGGAAGAGTCCGGCGTCTGAGCCTGGGAAGGAGATTCTGCAGAGTAAGAA
GGATAGGGCTAAGCTTGATGGGATGTATGAGTGTATTCTCTGTGCGTGTTGTAGCACGTCGTGTCCTAGT
TACTGGTGGAACCCTGAGTCTTACCTTGGCCCTGCCGCTTTGCTACACGCAAACAGGTGGATAAGCGACA
GTCGGGATGAGTACACAAAGGAAAGACTTGAGGCTATTGACGACGAGTTCAAGCTTTACCGTTGCCATAC
AATCTTGAACTGTGCCCGTGCCTGTCCAAAGGATGATGCTGCCATTTCAAGTCCTTATCTTAATGAAGAG
ATGAAAGATGTAGAGGCCATAATCAAAGAAGCGGAACCAGTTGAGCCATCTTCAGAGCCAGTCACGACTC
TGATCAATACTGTCTCCACCACCAGACAAACATTTCTCCCAAACTTGTGCACTATTTTGCCTCCGGTCGA
GATCTCTTGTCGTTTTCTTTGTCTTTCTGATCTTTTTCTTTTCCTCCGTTTGTTTTGCGTGTTTTTGTGT
TTCGTGGTAGCTGTTGCACGTGTGAGAGTGTGA