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Detail for ZS11_C09G19760.t1

Genome:
ZS11: ZS11_C09G19760.t1
ZS11_v0: BnaC09T0168600ZS
WE: WE_C09G20430.t1
WE_v0: BnaC09T0172300WE
Darmor: C09p19300.1_BnaDAR
BH: BnaC09T016300BH
Quinta: BnaC09T0166200QU
ZS2: BnaC09T166800ZS2
SW: BnaC09T148900SW
Express61: C09p015850.1_BnaEXP
Xiaoyun: BnaC09G0170500XY
P202: BnaC09G024990P202.1
BL: BnaC09T016300BH
TA: BnaA09T147800TA
Da-Ae: Not available
RB: BnaC09T015600RB
No2127: BnaC09T0133300NO
P130: BnaC09G016520P130.1
Length: 305
KOG ID: KOG4411
KOG E-value: Not available
KOG Score: 569.0
KOG Annotation: Lipid transport and metabolism
Biological Process: GO:0009058(biosynthetic process)
Cellular Component: -
Molecular Function: -
KEGG Ortholog: K18163 NDUFAF6; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 6
NR Protein: XP_013608805.1
NR E-value: 3.600000e-174
NR Score: 615.9
NR Annotation: XP_013608805.1 PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Brassica oleracea var. oleracea]
SwissProt Protein: D3ZN43|NDUF6_RAT
SwissProt E-value: 8.270000e-61
SwissProt Score: 199.0
SwissProt Annotation: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 OS=Rattus norvegicus OX=10116 GN=Ndufaf6 PE=3 SV=1
CDS Sequence (931 bp)
ATGAACGGACCACGAGGCTCGAGTAGTTTACGTTCAGCATTCTCTTACTGTGTACAACAAGTGCGTAACT
ATGACTACCATCACTACCTCTGTCTCCTTGAACTCCCACCTCAGATGCGTAAAGCCGCCTTTGCACTCCG
CGCTTTCAACGTAGAAACCGCAAGAGCCATGGATGTTGCATCAGATCCCAAAATCGGCTTGATGCGTTTA
CTCTGGTGGCAAGAAGCAATCGACAAACTCTACACGAAAAAAACCGTAAACCATCCAGCTGCACAAGCTC
TCTCTTGGGCCATATCAGAGCATAGCATCAGTAAACCGTGGCTTAAACGCTCGGTTGAAGCAAGAATCCG
AGATGCTCAAAGAGAAGCTGATGATATACCAGAGAGTGTCGAGGAGCTTGAGAAGTACGCAGAAGATACG
GTTTCAACCCTTCTGTACAATACTCTCCAAGCAGGTGGGATTAGTTCAACAGCAGCGGATCACGCAGCTT
CACACATCGGTAAAGCCAGTGGTCTTGTCTTGCTGCTGAAGTCGTTGCCTTACCACTGTACTAGAAACCG
TCACCACAATTACATCCCTGTGGAACTCGCTGAGAAGCACGGGCTGCTTGTGAAACAAGGTGGAATGTCT
GAGATCCTTTTGGATAATGATTCAAGAGAAGGGCTATGCAATGTAGTGTTTGAGATTGCATCTGTTGCCA
ATGTACATCTCTTGAAAGCTCGTGAGCTGGCGGGAAAAGTTCCTGCAGAAGCTAAACCGGTTCTGCTTCA
TTCTGTCCCGGTACAGGTTCTTCTGGATTCGTTGAGTAAAGTACATTTCGATGTGTTTGATCCGAGGATG
CAGAGAGGAGTTCTTGGTGTTCCTCCTCTTTGGTTTCAGGTTAGACTCAAGTGGTATTCATGGAGATCTA
CGTTCTGA
Upstream Sequence
AACGACGCCGTTTGACTACATTGCGCAATCGACACCTCTCCGGCACGATTGTTCAGAGTTCGATTTCCAT
TTTCAGGTGGAAAGTTCGATAATTTTAGATTCGGATGGTAGATTCCGTTCCGACAGATCTTCCGATTCGG
ACACCCTGATCTCAGAGTCCCTAAAGTTTAGGAGAAGAGAAAAGAAGTACCCTTTAAGCTAACCCGATGA
ACGGACCACGAGGCTCGAGTAGTTTACGTTCAGCATTCTCTTACTGTGTACAACAAGTGCGTAACTATGA
CTACCATCACTACCTCTGTCTCCTTGAACTCCCACCTCAGATGCGTAAAGCCGCCTTTGCACTCCGCGCT
TTCAACGTAGAAACCGCAAGAGCCATGGATGTTGCATCAGATCCCAAAATCGGCTTGATGCGTTTACTCT
GGTGGCAAGAAGCAATCGACAAACTCTACACGAAAAAAACCGTAAACCATCCAGCTGCACAAGCTCTCTC
TTGGGCCATATCAGAGCATAGCATCAGTAAACCGTGGCTTAAACGCTCGGTTGAAGCAAGAATCCGAGAT
GCTCAAAGAGAAGCTGATGATATACCAGAGAGTGTCGAGGAGCTTGAGAAGTACGCAGAAGATACGGTTT
CAACCCTTCTGTACAATACTCTCCAAGCAGGTGGGATTAGTTCAACAGCAGCGGATCACGCAGCTTCACA
CATCGGTAAAGCCAGTGGTCTTGTCTTGCTGCTGAAGTCGTTGCCTTACCACTGTACTAGAAACCGTCAC
CACAATTACATCCCTGTGGAACTCGCTGAGAAGCACGGGCTGCTTGTGAAACAAGGTGGAATGTCTGAGA
TCCTTTTGGATAATGATTCAAGAGAAGGGCTATGCAATGTAGTGTTTGAGATTGCATCTGTTGCCAATGT
ACATCTCTTGAAAGCTCGTGAGCTGGCGGGAAAAGTTCCTGCAGAAGCTAAACCGGTTCTGCTTCATTCT
GTCCCGGTACAGGTTCTTCTGGATTCGTTGAGTAAAGTACATTTCGATGTGTTTGATCCGAGGATGCAGA
GAGGAGTTCTTGGTGTTCCTCCTCTTTGGTTTCAGGTTAGACTCAAGTGGTATTCATGGAGATCTACGTT
CTGAGAAACTTCATGTCTATGTTTATTTTTCTGGTTTTAAAGACATTATTACAAAACTGTTCCAGTTTGT
TTGTCTTTTTGCCTTGTAATAATACAAACAGTGATGGATTGGATACAAAATAAGAGAATTTGTTTCATTT
TTTTTCTTTCAAATAATATACACAGT
Downstream Sequence
GAAACTTCATGTCTATGTTTATTTTTCTGGTTTTAAAGACATTATTACAAAACTGTTCCA
GTTTGTTTGTCTTTTTGCCTTGTAATAATACAAACAGTGATGGATTGGATACAAAATAAG
AGAATTTGTTTCATTTTTTTTCTTTCAAATAATATACACAGTTACATAAGAGTGTACAAT
ATGTTATAGTTGAAGAAGCCCATTTTCATGCATTCATGTTTCCTACAAAAGCCTGGGATC
ATTGTAGTGTATGATACAACATTGTACTCAAATCCATTGAATGTGAGGCCACAGAACAAA
TTCTAAGCATTATCCATAATACCAGCATCGCTTAATATATCTTAATATCAAGATCCATAC
CACTCTTGCATATCAAGTTCTAGGTGCGGGTCAAACGATTTGAAAAAATTGAATTGCGGG
TGCAAGCGCGGATCAACTATTTTTTTTAAACACGGTACCGCCAACCCACAAAATAAAATA
AAATAAAAATTTAAAGCTTTTTTTTAATTATAAAATTACAAACTTTAGTTAAAAATAATT
AAAAATCAAATATAAATAATTTTTTTACTTTTAGAAAAAGTAATTAAAATAATCATTTTG
TTATTTAAAATTACTTGCAGGTTTCGCGGGTTACCTACAAAATTAAGTGAAACATGTGTG
GGTGTAATAATTTCTCTTTCTGGAAATTAACTTCCAGGTGGGTTCGACCCGCTTCCCACA
CTAATTAGTAAATACAACCATTGCTTACTACTCAATCTTCCTGTTAGTAAAAAGACCATA
TAACAAAATGTTGCAGGTCCTAAAATTGGAAGCCGAACCATGAGAATCCATGTGTCTGAA
TTTTTTTGAGTATAGGGTGATTGGTTGGGATGTAGTAGCTGACTTTAGCTTTAATATTAA
TCTATAACCTTTAAATCATCAATCAAGATTTATCTTGTTTTCTAAAGCTACAATCAAAAG
ATAAAGATAAAAAGATGTAAAAGCCTTATTTTCTAAAGCCCAATTTTTTTGCCTGTAGAA
AATATATTACTGTAGCAAATATATTACTGTAGCAATTAATTTTAAAGCTACATCACTTAC
AACTAAATCAAAAAATTCTACGGTTTAAATTCTACAGTTACGGTCCAACCAATCACCCCC
ATATCTAATTTTCCCACTTAAAACAACCTTGGATAAGAGTGTCGTAAGAAACTGTATTGC
CATTTGCCAATTGCCAAGTAGTTGTCTTTGAGACATCTCGCTCAAGAGTTTCATCACATC
ATATACTTCCTTAGGCTTGCAACAATTCAGGAGAGCACTCCTTTCTTACCATCACCTCAA
GCATTGTCGGGCCTCATCTAAGCGACTATGCATACAAAGCAGGTCTAATTTTTAATTCTA
AAAATTTACTCATACTTGTAGTTAGGAAACCGGTTCTCACTATAAGCTTGTTCAAGCATG
TGCTTGGAGCTTCTAATGTGTTTAATAAATGTGAAGGCCAAAAAATATTTTCAATACCAA
CAGATGTACTTTTGTTTGACCCTCTCAATTGTAAAAAGGTCAACGGAGAAGACTGTTGTT
GTTGCTGCGGTTCCAAAAACCGATTTGGATAACCATGTAGAAGAAAACACTCAATCGTAT
CATACCCTTGTGATTGCAATGTGAACAAAAACGATTTGAATTCAACTTCATTGATTAGTA
GCAGCATCAGCCAATGGTGGAAAGGTGTTGAAGACTCTGTTTGAACAAAAAACCATATAA
CTTCATTTTTTTAATCTTTTTCATTACGCATGGTAGAGATAGTTTGTTCAGCTTGTATAA
CACGAGAGTAGATAGAATTTAAATGGGGAAGAGGTTCTTCATCAATTATCTAAGAACGAA
TGATAGCAAAATGAGTTTCATCAAAGCCGAAAAGAAACTTGTGGATTTGAGCATCCTCTC
GTTCTTTCTCGATTTCTGTAATGTAGAACAAGTACACATATTAGCAGTAGTAACTCAGAG
CTTAGAAAGCCGACCATAAT
Pro Sequence
MNGPRGSSSLRSAFSYCVQQVRNYDYHHYLCLLELPPQMRKAAFALRAFN
VETARAMDVASDPKIGLMRLLWWQEAIDKLYTKKTVNHPAAQALSWAISE
HSISKPWLKRSVEARIRDAQREADDIPESVEELEKYAEDTVSTLLYNTLQ
AGGISSTAADHAASHIGKASGLVLLLKSLPYHCTRNRHHNYIPVELAEKH
GLLVKQGGMSEILLDNDSREGLCNVVFEIASVANVHLLKARELAGKVPAE
AKPVLLHSVPVQVLLDSLSKVHFDVFDPRMQRGVLGVPPLWFQVRLKWYS
WRSTF
mRNA Sequence
AACGACGCCGTTTGACTACATTGCGCAATCGACACCTCTCCGGCACGATTGTTCAGAGTTCGATTTCCAT
TTTCAGGTGGAAAGTTCGATAATTTTAGATTCGGATGGTAGATTCCGTTCCGACAGATCTTCCGATTCGG
ACACCCTGATCTCAGAGTCCCTAAAGTTTAGGAGAAGAGAAAAGAAGTACCCTTTAAGCTAACCCGATGA
ACGGACCACGAGGCTCGAGTAGTTTACGTTCAGCATTCTCTTACTGTGTACAACAAGTGCGTAACTATGA
CTACCATCACTACCTCTGTCTCCTTGAACTCCCACCTCAGATGCGTAAAGCCGCCTTTGCACTCCGCGCT
TTCAACGTAGAAACCGCAAGAGCCATGGATGTTGCATCAGATCCCAAAATCGGCTTGATGCGTTTACTCT
GGTGGCAAGAAGCAATCGACAAACTCTACACGAAAAAAACCGTAAACCATCCAGCTGCACAAGCTCTCTC
TTGGGCCATATCAGAGCATAGCATCAGTAAACCGTGGCTTAAACGCTCGGTTGAAGCAAGAATCCGAGAT
GCTCAAAGAGAAGCTGATGATATACCAGAGAGTGTCGAGGAGCTTGAGAAGTACGCAGAAGATACGGTTT
CAACCCTTCTGTACAATACTCTCCAAGCAGGTGGGATTAGTTCAACAGCAGCGGATCACGCAGCTTCACA
CATCGGTAAAGCCAGTGGTCTTGTCTTGCTGCTGAAGTCGTTGCCTTACCACTGTACTAGAAACCGTCAC
CACAATTACATCCCTGTGGAACTCGCTGAGAAGCACGGGCTGCTTGTGAAACAAGGTGGAATGTCTGAGA
TCCTTTTGGATAATGATTCAAGAGAAGGGCTATGCAATGTAGTGTTTGAGATTGCATCTGTTGCCAATGT
ACATCTCTTGAAAGCTCGTGAGCTGGCGGGAAAAGTTCCTGCAGAAGCTAAACCGGTTCTGCTTCATTCT
GTCCCGGTACAGGTTCTTCTGGATTCGTTGAGTAAAGTACATTTCGATGTGTTTGATCCGAGGATGCAGA
GAGGAGTTCTTGGTGTTCCTCCTCTTTGGTTTCAGGTTAGACTCAAGTGGTATTCATGGAGATCTACGTT
CTGAGAAACTTCATGTCTATGTTTATTTTTCTGGTTTTAAAGACATTATTACAAAACTGTTCCAGTTTGT
TTGTCTTTTTGCCTTGTAATAATACAAACAGTGATGGATTGGATACAAAATAAGAGAATTTGTTTCATTT
TTTTTCTTTCAAATAATATACACAGT