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Detail for scaffold0178G00030.t1

Genome:
ZS11: scaffold0178G00030.t1
ZS11_v0: BnaC01T0319000ZS
WE: WE_A01G29350.t1
WE_v0: BnaC04T0165200WE
Darmor: BNapus_Darmor_BZH_scaffold_234p00330.1_BnaDAR
BH: BnaC07T297200BH
Quinta: BnaC01T0216500QU
ZS2: BnaC05T440400ZS2
SW: BnaA06T230700SW
Express61: Not available
Xiaoyun: BnaC07G0292500XY
P202: BnaC05G046490P202.1
BL: BnaC07T297200BH
TA: BnaC05T449000TA
Da-Ae: Not available
RB: BnaC02T113300RB
No2127: BnaC04T0213100NO
P130: BnaC05G055870P130.1
Length: 159
KOG ID: KOG4770
KOG E-value: 8.960000e-58
KOG Score: 184.0
KOG Annotation: Energy production and conversion
Biological Process: -
Cellular Component: GO:0016020(membrane)
Molecular Function: -
KEGG Ortholog: K03878 ND1; NADH-ubiquinone oxidoreductase chain 1 [EC:7.1.1.2]
NR Protein: CDY45488.1
NR E-value: 4.700000e-85
NR Score: 318.9
NR Annotation: CDY45488.1 BnaCnng12470D [Brassica napus]
SwissProt Protein: Q01300|NU1M_PETHY
SwissProt E-value: 1.070000e-57
SwissProt Score: 185.0
SwissProt Annotation: NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida OX=4102 GN=ND1 PE=3 SV=1
CDS Sequence (486 bp)
ATGGCTTTTGTGCAACGTAGAAAGGGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAG
ATGGTTCGAAATTGATTCTAAAAGAACCTATTTCACCAAGTAGTGCTAATTTTTTCCTTTTTAGAATGGC
TCCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTG
TCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAG
CGGGTCGGTCTAGTGTTGAACGATCTACTCTACACAGGTGTGGGCTTACAGGGCTAGGGCTCAGAAACCC
TTTCTTTCATTCATCAAGAGGGCTAGACGCGCCTTTCGAACCAGTCTTTATAAACCTGGTCGCTCACTTT
TCCGGGCCGGGATCGATAAGTAGAAGTCATAAAAAGATATGTTTCTCTTCGCACCACTGA
Upstream Sequence
ATGGCTTTTGTGCAACGTAGAAAGGGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAG
ATGGTTCGAAATTGATTCTAAAAGAACCTATTTCACCAAGTAGTGCTAATTTTTTCCTTTTTAGAATGGC
TCCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTG
TCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAG
CGGGTCGGTCTAGTGTTGAACGATCTACTCTACACAGGTGTGGGCTTACAGGGCTAGGGCTCAGAAACCC
TTTCTTTCATTCATCAAGAGGGCTAGACGCGCCTTTCGAACCAGTCTTTATAAACCTGGTCGCTCACTTT
TCCGGGCCGGGATCGATAAGTAGAAGTCATAAAAAGATATGTTTCTCTTCGCACCACTGA
Downstream Sequence
GTAATTAGGGGGCGGCCGTTCGGTCGCCTATGAGACTAGGACCAATAGGTCAAAAATTGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGCTTACAGGGCTAGGGC
TCAGAAACCCTTTCTTTCATTCATCAAGAGGGCTAGACGCGCCTTTCGAACCAGTCTTTA
TAAACCTGGTCGCTCACTTTTCCGGGCCGGGATCGATAAGTAGAAGTCATAAAAAGATAT
GTTTCTCTTCGCACCACTGATAGACTACTAAAGATTCAATTAAAAAGGCCCTACTTAGTT
TCGCAAGCCTTTGTCATTGTCAGTCAACTAAGTAGGTCGTTCCGCCCCCTGCGAATCCGT
AAATCTGAGGAGCATGCCGCAACAAAAGGATGGTCCCCTATGCATTTCATTCTTTCCAGA
AAGGAAAATTAGAAGTACCCCCATCATGGTGAACCTCTCCTTGTGATCGGGATGAGGTAA
ATGCCTCCCAGCCGGGGGGCGGATCGAATCGGAGTTTCCTTAGGTAGCCACCGACCTACA
GTTATCCTTAAACTTCCGTGCTTGGTGGAGAAGAAGCGAACAAAGGTACGCTCGCTTGCT
GTCTTGTTCTCTGCCGCGAACTGGGATCGCTCGCCAGCTAGGTCAGATTGAAGCAACATT
TTTTGAGAACATATTACCCATCTTCGGGGACAAGGGGCGGAACGACCTCTCGATCTACTT
ACAGCAGCCCAGGAATAAAAACGTCGTCTAGGCGTTCCCTCTTGCTCCGATCTACCCTAC
GCCTAGGACGTTGTCTGGGCCAAGAGTCATAGTTAGTTGCTGTTTCCATTTGGTTGTTTT
TTTCTCGTTGTTGATACCGGCAAGACCCAGCCAGATGATGTCTGCTGGTTGGTAGTGAGA
GGACTCTTAGTATCGGCATACCCAAAAGGAGGCGCTAATTAAAAAACAAGAATTTGATTT
TCTTTCTTGCTCTCCCTTAGCAGCGGGAAAGGAGTCTATCTATCTGCCTAGCTTTGGTAG
ATTTCCCCCAACGCAATTCACAGAAATTCCACGAATCCCTTGGTGGATAAGTCCGACGAC
TCAGCAGCAGTGCGGAATTGAGTTTCTCGTCTGGTGGATCTGATCTATAGTTATGGGGCA
ATACATACCAAAAGGTTCGAAGAAAGAGTCGTTAAGCCGAGAAAGCTCAAAATTTGCCTT
CTCATCAAAAATAAAGAAGGTTCTTCTCAAGACCTTAAGAGCAGCAAGAAGAAAAGTCAG
AAGAAAGCCCAGGGGGTAGTGGCCTTTCTTCTCAGAAGCAAAGGTAAGTCCATTCTGTAC
CAATTTTTGTTGCTGGAATATATTCGGACTAAACACGGAGTATAAACAAACAGGCTGAGA
TTAGAAAGCTGATCAGACAGAATAACCTCTCTCTTTTTGCCCTAGCTAACAAGTAAACGA
GTGAATATTGCGAAAGTGAACGGAATGCTGTTGGCATCTTCGAGCCAACCTGGAGTTCTT
CTTCCAGTAAGACGCGTTGTAGTTCGTAGGCTAAGTGAAAACGGGGAGCTACGGCTGATC
GAAAAGCGAAGATAGGCGCATAGTTCAGTGATCTATCCACGAAAGAGGGAACTCAAAGAG
GCGTTCCTCGATCCGCTTCTTTTAACAAGATAGGACAAGAAAACGAGAACTACAGTTCGA
GTGAGCGGCTAAGTAAGCAGAGCTCGTAACCTCGAGTTATGTATATAGAACTAATAATCT
TTCTTATTGTCTTTAAAACACCTAAGTCCTAACAAAGCTACCAACCTTCTTGTACTTCCA
GACAAGTAAGGGGTTCCTCCAGGTGCTGGTGTTGAGTTAAACAAACAAACGGGAGTCAGA
TAATAAGAAACGAAAACAAAGACTTTTCGGACCGAAGGGATATATCAGGATAAAGAGTTT
GTAACTCACTTGCTTGCTAAAGGTAGCGCTAGCTAAAGTAAACTTGAGCTACGGACTTAG
GAAAGAAAGGCAGCTAGTCG
Pro Sequence
MAFVQRRKGPDVVGSFGLLQPLADGSKLILKEPISPSSANFFLFRMAPVA
TFMLSLVARAVVPFDYGMVLSDPNIGLLYLFAISSLGVYGIIIAGRSSVE
RSTLHRCGLTGLGLRNPFFHSSRGLDAPFEPVFINLVAHFSGPGSISRSH
KKICFSSHH
mRNA Sequence
ATGGCTTTTGTGCAACGTAGAAAGGGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAG
ATGGTTCGAAATTGATTCTAAAAGAACCTATTTCACCAAGTAGTGCTAATTTTTTCCTTTTTAGAATGGC
TCCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTG
TCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAG
CGGGTCGGTCTAGTGTTGAACGATCTACTCTACACAGGTGTGGGCTTACAGGGCTAGGGCTCAGAAACCC
TTTCTTTCATTCATCAAGAGGGCTAGACGCGCCTTTCGAACCAGTCTTTATAAACCTGGTCGCTCACTTT
TCCGGGCCGGGATCGATAAGTAGAAGTCATAAAAAGATATGTTTCTCTTCGCACCACTGA