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Detail for scaffold0653G00030.t1

Genome:
ZS11: scaffold0653G00030.t1
ZS11_v0: Bnascaffold2794T0000200ZS
WE: WE_C02G02300.t1
WE_v0: Bnascaffold826T0000600WE
Darmor: C09p40500.1_BnaDAR
BH: Bnascaffold0154T000900BH
Quinta: Not available
ZS2: BnaC02T374600ZS2
SW: BnaA06T234100SW
Express61: C09p042030.1_BnaEXP
Xiaoyun: BnaC02G0383700XY
P202: Not available
BL: Bnascaffold0154T000900BH
TA: BnaC02T384900TA
Da-Ae: Not available
RB: BnaA06T221400RB
No2127: BnaC09T0281000NO
P130: Not available
Length: 120
KOG ID: KOG4662
KOG E-value: 9.930000e-79
KOG Score: 228.0
KOG Annotation: Energy production and conversion
Biological Process: -
Cellular Component: -
Molecular Function: GO:0008137(NADH dehydrogenase (ubiquinone) activity),GO:0016651(oxidoreductase activity, acting on NAD(P)H)
KEGG Ortholog: -
NR Protein: YP_005089957.1
NR E-value: 7.500000e-59
NR Score: 231.5
NR Annotation: YP_005089957.1 ndhC gene product (chloroplast) [Brassica napus]
SwissProt Protein: A4QLJ9|NU3C_LOBMA
SwissProt E-value: 1.710000e-78
SwissProt Score: 229.0
SwissProt Annotation: NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Lobularia maritima OX=226051 GN=ndhC PE=3 SV=1
CDS Sequence (368 bp)
ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTAATAATATCAAGTGCTATTCCTGTTTTGG
CATTTCTAATTTCCGGGGTTTTATCTCCAATTACGAAGGGGCCGGAGAAACTTTCTAGTTATGAATCAGG
TATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTT
GTTTTTGATGTTGAAACCGTTTTTCTGTATCCGTGGGCAATGAGTTTCGATGTACTAGGGGTATCCGCTT
TTATAGAAGCTTTCATTTTCGTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCGTT
GGAATGGTCTTAG
Upstream Sequence
ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTAATAATATCAAGTGCTATTCCTGTTTTGG
CATTTCTAATTTCCGGGGTTTTATCTCCAATTACGAAGGGGCCGGAGAAACTTTCTAGTTATGAATCAGG
TATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTT
GTTTTTGATGTTGAAACCGTTTTTCTGTATCCGTGGGCAATGAGTTTCGATGTACTAGGGGTATCCGCTT
TTATAGAAGCTTTCATTTTCGTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCGTT
GGAATGGTCTTAG
Downstream Sequence
TTCGTTTCCTGAATACTTGTACAATAACAATAAAAAAAAAGTAAAAAAAAACCATTGAAA
CAATTATGAATTCCATTAAGTTTCCCGTACTTGATCGAACAACAAAAAACTCAGTTATTT
CAACTACGTTAAATGATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTT
ATGGTACCAGTTGTTGTTTTATTGAATTTGCCTCATTAATAGGCTCCCGATTTGACTTTG
ATCGTTATGGGCTAGTACCAAGATCAAGTCCTAGACAGGCGGACCTTATTTTAACAGCAG
GTACAGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATGAACAAATGCCTGAAC
CAAAGTATGTTATTGCTATGGGAGCGTGTACAATTACAGGGGGGATGTTCAGTACCGATT
CTTATAGTACTGTTCGAGGGGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTT
GTCCACCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTA
GAGAAATCTATAAGGATCGAATTAGACCTCAACGGGGTAATCGGTGTTTTACTACCAATC
ACAAGTTTTTTGTTGTACGCAGTACACAGACTGGAAATTATGATCAAGAATTACTCTATC
CACCATCATCTACTTCAGAGATCTCTACTGAAACATTTTTTAAATACAAAAGCCCAGTAT
CTTCCCACGAATTAGTGAATTAGGGAGGATTTGAGAGAATAAGAAAAAAATCTTCATAAA
TTAGAACTCATGGTAAATGTGAAATACTTAAATTTATATAAAAAAGGTGTGGGGGAAATA
AAAAAGATGCAGGGCACTTTGTCCGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCG
TTGGGCTTCGATTACCAAGGAATAGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCT
ATTGCTGTAATTTTATATGTATATGGTTACAATTATTTACGTTCCCAATGTGCCTATGAT
GTGGCACCAGGTGGCCTCTTAGCCAGTGTGTATCATCTTACGAGAATAGAATATGGTGTC
AATCAAGCGGAAGAAGTTTGCATAAAAGTATTTACTCACAGGAGTAATCCCAGAATTCCA
TCTGTTTTCTGGGTTTGGAAAAGTACGGATTTTCAAGAACGGGAATCTTATGATATGTTA
GGAATCACTTATGATAGCCATCCGCGGCTGAAACGGATCTTAATGCCCGAAAGTTGGATA
GGGTGGCCTTTACGTAAGGATTATATTGCCCCCAATTTTTATGAAATACAAGATGCTTAT
TGAATGATAAAAAATTTGAATGATAAAAATGAGTCTTAGTTTCTACAACTACGGACCTTC
GCGGAATATTTTGAATTCGAGTCGTTTTTAGATCAAACAAACAGAAGAATTAAGGTCTTA
TTCATATTATTATAGATAGCTTAATCTCCAATTTGAAAGATACTTTTTTCCTAAAAGCCG
AGCCAATAGGATGAACTAAAAAAAAAAAAAAGAGTTCTGCATTATGAACTTTGTATCGCG
CACATAACTTAGTCAACTTTAGTCACATAACTGGGAATGAATAAATAAGATTGGAAAGCA
ATACAATAAATGGGGGGGTTAAAATTCTATTTCTATTGTATCTAATCTAATGAATCTTGG
GGGTATTTCTGCCCTTCAACGATAGATACTATAGATAGATATAGATAGATAGATATAGAT
CTTTTTTTTTTTACTTTTTTTTATTCTTTCAACCAGAACTTTCCTTTCGAATATGTATTA
GGTATAAAGTCTTATACATTTTTTTTGAACGGATGGATCCACAACATGAACAAAAAAGAG
AGGGGGATAAAGGATTATTGCACTTTTTTTACTAAAGATACGTTTAATTTGAAGACTATA
AACTTATCAAAATTAATCAATCCTATGCCAAGAACCAGATTTGAACTGGTGACACGAGGA
TTTTCAGTCCTCTGCTCTAC
Pro Sequence
MFLLYEYDIFWAFLIISSAIPVLAFLISGVLSPITKGPEKLSSYESGIEP
IGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIF
VLILILGLVYAWRKGALEWS
mRNA Sequence
ATGTTTCTGCTTTACGAATATGATATTTTCTGGGCATTTTTAATAATATCAAGTGCTATTCCTGTTTTGG
CATTTCTAATTTCCGGGGTTTTATCTCCAATTACGAAGGGGCCGGAGAAACTTTCTAGTTATGAATCAGG
TATAGAACCGATCGGGGATGCTTGGTTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTT
GTTTTTGATGTTGAAACCGTTTTTCTGTATCCGTGGGCAATGAGTTTCGATGTACTAGGGGTATCCGCTT
TTATAGAAGCTTTCATTTTCGTGCTTATCCTAATTCTTGGTTTAGTTTATGCATGGCGAAAAGGAGCGTT
GGAATGGTCTTAG