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Detail for scaffold0653G00040.t1

Genome:
ZS11: scaffold0653G00040.t1
ZS11_v0: BnaA02T0042000ZS
WE: WE_C02G02310.t1
WE_v0: Bnascaffold826T0000500WE
Darmor: BNapus_Darmor_BZH_scaffold_287p00090.1_BnaDAR
BH: BnaC09T203300BH
Quinta: BnaA02T0039800QU
ZS2: BnaC02T374500ZS2
SW: BnaC09T338800SW
Express61: C09p042020.1_BnaEXP
Xiaoyun: BnaC02G0383600XY
P202: BnaC01G064010P202.1
BL: BnaC09T203300BH
TA: BnaA06T214400TA
Da-Ae: Not available
RB: BnaC09T198400RB
No2127: BnaC09T0281100NO
P130: BnaC02G047720P130.1
Length: 225
KOG ID: KOG1687
KOG E-value: 1.320000e-165
KOG Score: 456.0
KOG Annotation: Energy production and conversion
Biological Process: -
Cellular Component: -
Molecular Function: GO:0008137(NADH dehydrogenase (ubiquinone) activity),GO:0048038(quinone binding),GO:0051539(4 iron, 4 sulfur cluster binding),GO:0051536(iron-sulfur cluster binding)
KEGG Ortholog: -
NR Protein: YP_005089956.1
NR E-value: 7.800000e-126
NR Score: 454.9
NR Annotation: YP_005089956.1 ndhK gene product (chloroplast) [Brassica napus]
SwissProt Protein: A4QLJ8|NDHK_LOBMA
SwissProt E-value: 2.430000e-166
SwissProt Score: 460.0
SwissProt Annotation: NAD(P)H-quinone oxidoreductase subunit K, chloroplastic OS=Lobularia maritima OX=226051 GN=ndhK PE=3 SV=1
CDS Sequence (687 bp)
ATGAATTCCATTAAGTTTCCCGTACTTGATCGAACAACAAAAAACTCAGTTATTTCAACTACGTTAAATG
ATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGTACCAGTTGTTGTTTTATTGA
ATTTGCCTCATTAATAGGCTCCCGATTTGACTTTGATCGTTATGGGCTAGTACCAAGATCAAGTCCTAGA
CAGGCGGACCTTATTTTAACAGCAGGTACAGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATG
AACAAATGCCTGAACCAAAGTATGTTATTGCTATGGGAGCGTGTACAATTACAGGGGGGATGTTCAGTAC
CGATTCTTATAGTACTGTTCGAGGGGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCA
CCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAAATCTATAAGG
ATCGAATTAGACCTCAACGGGGTAATCGGTGTTTTACTACCAATCACAAGTTTTTTGTTGTACGCAGTAC
ACAGACTGGAAATTATGATCAAGAATTACTCTATCCACCATCATCTACTTCAGAGATCTCTACTGAAACA
TTTTTTAAATACAAAAGCCCAGTATCTTCCCACGAATTAGTGAATTAG
Upstream Sequence
ATGAATTCCATTAAGTTTCCCGTACTTGATCGAACAACAAAAAACTCAGTTATTTCAACTACGTTAAATG
ATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGTACCAGTTGTTGTTTTATTGA
ATTTGCCTCATTAATAGGCTCCCGATTTGACTTTGATCGTTATGGGCTAGTACCAAGATCAAGTCCTAGA
CAGGCGGACCTTATTTTAACAGCAGGTACAGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATG
AACAAATGCCTGAACCAAAGTATGTTATTGCTATGGGAGCGTGTACAATTACAGGGGGGATGTTCAGTAC
CGATTCTTATAGTACTGTTCGAGGGGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCA
CCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAAATCTATAAGG
ATCGAATTAGACCTCAACGGGGTAATCGGTGTTTTACTACCAATCACAAGTTTTTTGTTGTACGCAGTAC
ACAGACTGGAAATTATGATCAAGAATTACTCTATCCACCATCATCTACTTCAGAGATCTCTACTGAAACA
TTTTTTAAATACAAAAGCCCAGTATCTTCCCACGAATTAGTGAATTAG
Downstream Sequence
GGAGGATTTGAGAGAATAAGAAAAAAATCTTCATAAATTAGAACTCATGGTAAATGTGAA
ATACTTAAATTTATATAAAAAAGGTGTGGGGGAAATAAAAAAGATGCAGGGCACTTTGTC
CGTTTGGCTAGCCAAACGCGGGCTGGTTCATAGATCGTTGGGCTTCGATTACCAAGGAAT
AGAGACTTTACAAATAAAGCCCGAAGATTGGCATTCTATTGCTGTAATTTTATATGTATA
TGGTTACAATTATTTACGTTCCCAATGTGCCTATGATGTGGCACCAGGTGGCCTCTTAGC
CAGTGTGTATCATCTTACGAGAATAGAATATGGTGTCAATCAAGCGGAAGAAGTTTGCAT
AAAAGTATTTACTCACAGGAGTAATCCCAGAATTCCATCTGTTTTCTGGGTTTGGAAAAG
TACGGATTTTCAAGAACGGGAATCTTATGATATGTTAGGAATCACTTATGATAGCCATCC
GCGGCTGAAACGGATCTTAATGCCCGAAAGTTGGATAGGGTGGCCTTTACGTAAGGATTA
TATTGCCCCCAATTTTTATGAAATACAAGATGCTTATTGAATGATAAAAAATTTGAATGA
TAAAAATGAGTCTTAGTTTCTACAACTACGGACCTTCGCGGAATATTTTGAATTCGAGTC
GTTTTTAGATCAAACAAACAGAAGAATTAAGGTCTTATTCATATTATTATAGATAGCTTA
ATCTCCAATTTGAAAGATACTTTTTTCCTAAAAGCCGAGCCAATAGGATGAACTAAAAAA
AAAAAAAAGAGTTCTGCATTATGAACTTTGTATCGCGCACATAACTTAGTCAACTTTAGT
CACATAACTGGGAATGAATAAATAAGATTGGAAAGCAATACAATAAATGGGGGGGTTAAA
ATTCTATTTCTATTGTATCTAATCTAATGAATCTTGGGGGTATTTCTGCCCTTCAACGAT
AGATACTATAGATAGATATAGATAGATAGATATAGATCTTTTTTTTTTTACTTTTTTTTA
TTCTTTCAACCAGAACTTTCCTTTCGAATATGTATTAGGTATAAAGTCTTATACATTTTT
TTTGAACGGATGGATCCACAACATGAACAAAAAAGAGAGGGGGATAAAGGATTATTGCAC
TTTTTTTACTAAAGATACGTTTAATTTGAAGACTATAAACTTATCAAAATTAATCAATCC
TATGCCAAGAACCAGATTTGAACTGGTGACACGAGGATTTTCAGTCCTCTGCTCTACCAA
CTGAGCTATCCCGGCCATTACCGAAGTATCATTCTCATTTTATGAGATGACTTAGGTCTA
TGTCAATTAAAAGAAACGCAAAAGTAGTAAATGAAAAAAGTTTTGGACCGGGAATTTATT
GGATCTTCGAAAAGAAGACTTTCTAAGTTTTAGAATGAAAAATTATTTAGATTCGAAATA
ATTCAAATCGATAGTTCTTTCTCATTTGTATATGTATGATATATCCCACAAGACTTGTAT
ATAATAAGAAAAGAAATTCGAGTTTGTAAAAGTGTCGGATGAATGAAAAAAGATCAATGA
ATTCTTGAATAACTAAAAAAAGGGTAAGGTGTCAAACAGACTTTTTTAGGGAGTAGGGTT
GGGGATAGAGGGACTTGAACCCTCACGATTTTAAAAGTCAACGGATTTTCATCTTACTAT
AAATTTCATTGTTGTCAGTATTGACATGTAGAATGGGACTCTATCTTTATTCTCGTCCGA
TTAATAAGTTCCACCAAGGATCTATCAGACTATGAAGTGAATCGTTTGATTCAACACAAG
GGATTGAACTCCATTTGTTAGAACAGCTTCCATTGAGTCTCTGCACCTATCCCGCTTTCT
AAACTCTGGTTTGTTCGCGTAACCCAGGATTTGGCTCAGGATTGCCCATTGTTAATTCCA
GGGTTTCTCTGAATTTGAAAGTTATCACTTAGTAGGTTTCCATACCAAGGCTCAATCCAA
TTAAGTCCGTAGCGTCTACC
Pro Sequence
MNSIKFPVLDRTTKNSVISTTLNDLSNWSRLSSLWPLLYGTSCCFIEFAS
LIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPK
YVIAMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAI
TKLRKKIAREIYKDRIRPQRGNRCFTTNHKFFVVRSTQTGNYDQELLYPP
SSTSEISTETFFKYKSPVSSHELVN
mRNA Sequence
ATGAATTCCATTAAGTTTCCCGTACTTGATCGAACAACAAAAAACTCAGTTATTTCAACTACGTTAAATG
ATCTTTCAAATTGGTCAAGACTTTCCAGCCTATGGCCGCTTCTTTATGGTACCAGTTGTTGTTTTATTGA
ATTTGCCTCATTAATAGGCTCCCGATTTGACTTTGATCGTTATGGGCTAGTACCAAGATCAAGTCCTAGA
CAGGCGGACCTTATTTTAACAGCAGGTACAGTAACAATGAAAATGGCTCCTTCTTTAGTGAGATTATATG
AACAAATGCCTGAACCAAAGTATGTTATTGCTATGGGAGCGTGTACAATTACAGGGGGGATGTTCAGTAC
CGATTCTTATAGTACTGTTCGAGGGGTTGATAAGCTAATTCCTGTAGATGTCTATTTGCCGGGTTGTCCA
CCTAAACCAGAGGCTGTTATAGACGCTATAACAAAGCTTCGTAAGAAAATAGCTAGAGAAATCTATAAGG
ATCGAATTAGACCTCAACGGGGTAATCGGTGTTTTACTACCAATCACAAGTTTTTTGTTGTACGCAGTAC
ACAGACTGGAAATTATGATCAAGAATTACTCTATCCACCATCATCTACTTCAGAGATCTCTACTGAAACA
TTTTTTAAATACAAAAGCCCAGTATCTTCCCACGAATTAGTGAATTAG