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Detail for scaffold2279G00040.t1

Genome:
ZS11: scaffold2279G00040.t1
ZS11_v0: BnaA05T0244400ZS
WE: WE_C06G22530.t1
WE_v0: Bnascaffold2533T0001000WE
Darmor: C06p23140.1_BnaDAR
BH: Not available
Quinta: BnaA06T0194000QU
ZS2: Not available
SW: Not available
Express61: C06p015450.1_BnaEXP
Xiaoyun: BnaC01G0350300XY
P202: BnaC09G035360P202.1
BL: Not available
TA: Not available
Da-Ae: Not available
RB: Not available
No2127: BnaA04T0032800NO
P130: BnaC09G022080P130.1
Length: 140
KOG ID: KOG4668
KOG E-value: 1.230000e-93
KOG Score: 276.0
KOG Annotation: Energy production and conversion
Biological Process: -
Cellular Component: -
Molecular Function: -
KEGG Ortholog: -
NR Protein: AKZ21995.1
NR E-value: 1.600000e-73
NR Score: 280.4
NR Annotation: AKZ21995.1 NADH dehydrogenase subunit 2 (plastid) [Impatiens capensis]
SwissProt Protein: P0CC48|NU2C1_COFAR
SwissProt E-value: 7.360000e-93
SwissProt Score: 281.0
SwissProt Annotation: NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica OX=13443 GN=ndhB1 PE=3 SV=1
CDS Sequence (429 bp)
ATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGTGGTGCTA
ACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATAC
CAAGAAAGATGTACGATCTAATGAAGCTACTATGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATT
CTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATTGAGCTTCAAGAAATAGTGAATG
GTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAAT
TGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTT
TGA
Upstream Sequence
ATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGTGGTGCTA
ACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATAC
CAAGAAAGATGTACGATCTAATGAAGCTACTATGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATT
CTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATTGAGCTTCAAGAAATAGTGAATG
GTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAAT
TGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTT
TGA
Downstream Sequence
AGAAATTCCTACCTCTCTATCTATCTCTGAGATGTTTGGATTTTTCAAAACTCCATGGAC
ATGCAGAAGAGAAATGCTATCCCCACGCAGACCAAGACAGAACTTTGACTTGTTCAAATA
ACAATTAATGTGAAGCAGGGTCAGGAACAACGAATCTCTTTATGATAAACGGATCCATTT
TGCAAGTTTGTTATTACGGGTAGTTCCTACAAAGGATCGGACTAATGACGTATACAAGAA
AGACTTGAATTCTCGATGTAGATGCTACATAGTTGGTTCTCATCCTTCAGAGACTACGAG
TGTAATAGGAGCATCCGTCGACAAAAGGATCACCCTAAGATGATCATCTCATGGCTATTG
AGAACGAATCAAATCAGATGGTTCCATTTCTCAATCTTTCGGACGTGCTCCTACGGAACC
AAGGTCGAAACGATTGAGAAAAATCAGTCATTCACAACCACTGATGAAGGATTCCTCGAA
AAGTTAAGGATTAGTAATCCGTTTTAGAAAGGATTCGATCTTATACATACGCGAGGAAAG
TAATCAAAAAAGAAAGAAGATGAGTTCTTCTTTACTTTTATCACTTAGGAGCCGTGCGAG
ATGAAAGTCTCATGCACGGTTTTGAATGAGAGAAAGAAGTGAGGAATCCTCTTTTCGACT
CTGACTCTCCCACTCCAGTCGTTGCTTTTCTTTCTGTTACTTCGAAAGTAGCTGCTTCAG
CTTTAGCCACTCGAATTTTCGATATTCCTTTTTATTTCTCATCAAATGAATGGCATCTTC
TTCTGGAAATCCTAGCTATTCTTAGCATGATATTGGGGAATCTCATTGCTATTACTCAAA
CAAGCATGAAACGTATGCTTGCATATTCGTCCATAGGTCAAATCGGATATGTAATTATTG
GAATAATTGTTGGAGACTCAAATGGTGGATATGCGAGCATGATAACTTATATGCTGTTCT
ATATCTCCATGAATCTAGGAACTTTTGCTTGCATTATATTATTTGGTCTACGTACCGGAA
CTGATAACATTCGAGATTATGCAGGATTATACACAAAAGATCCTTTTTTGGCTCTCTCTT
TAGCTCTATGTCTCTTATCCCTAGGAGGTCTTCCTCCACTAGCAGGTTTTTTTGGAAAAC
TCCATTTATTCTGGTGTGGATGGCGGGCAGGCCTATATTTCTTGGTTTCAATAGGACTCC
TTACGAGCGTTCTTTCTATCTACTATTATCTAAAAATAATCAAGTTATTAATGACTGGAC
GAAACCAAGAAATAACCCCTCACGTGCGAAATTATAGAATATCCCCTTTAAGATCAACCA
ATTCCATCGAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAA
TGAACCCGATTATTGCGATTGCTCAGGATACCCTTTTTAGCTTCTAGAATCTATTTCTTA
GTTCAAGATCCCTCTTACTAACTGGAATCAAAGAATTAGTAGATCGGTTCCGCCCAAAAT
GGGAATGGACTAAGGTTATGAACTTATAATCTATAATCTGATGATCGAGTCGATTCCATG
ATTATAAGTTCATTCCATACCGGACCAGACCGGAATAAGGTTATATACATTCTCATTATG
AGAAGGGGTCATTCGAGCGTATCTAAATAGATACTATGTTTACATAGGGATCCCTACGTC
GTTACATTCCATTTAGGATTAGGAATAGGCGAAATCTGACCTACTTTTTACATATCTCTC
GTTATTTGGGACCCTATTCACCTCTTTGGTTGGACTTCTATTGAATCGAGAAATAGGTTT
GATTGTCCATCTTTTTGATATAATATTAATATATATATAAGGCATCCTCCGGATAAGGAT
AATTCAAATCTAAGCAATTAGATGTCCGACTCGGGCCTATATGACATGACCGATCAATAG
AAATACTTCAACACTCCACCTTTGTCATATATTCAATACACCGTACTAGATAGATATCAT
ATTTATGGAATACGATTCAC
Pro Sequence
MAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKD
VRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQM
YNSPGISIALIFITVGIGFKLSLAPSHQWTPDVYEGVRFV
mRNA Sequence
ATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGTGGTGCTA
ACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATAC
CAAGAAAGATGTACGATCTAATGAAGCTACTATGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATT
CTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGGGGAGAGATTGAGCTTCAAGAAATAGTGAATG
GTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAAT
TGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTT
TGA