TE Explorer (unfinished)

A unified platform for analyzing the TE landscape. Explore genome-wide distribution, class composition, and dominant families, combined with advanced filtering and FASTA sequence retrieval.

TE Load

Genome Size

TE Covered (merged)

Total TE Copies

Variety & Genomic Distribution

Across genomes TE insertions

Class-stacked coverage by variety

Percent shown at bar end; LTR, DNA, Helitron, LINE, SINE, Unknown.

Insertion locations

Upstream and downstream windows are 10 kb.

Composition & Top TE Families

TE density ring (static) plus chromosome stack and dominant families.

Genome

TE density ring

Chromosome Stack

Top 20 chromosomes by TE coverage, A01-A09 and C01-C10 first.

Family	Class	Copies	Span (bp)

Search

Species

Coordinate

: -

Example: A01:100000-200000

Class

Order / Superfamily

Family

Length (bp)

Identity ≥

Structure

Gene proximity

Lengths used for upstream, downstream, and flank.

TE	Class / Superfamily	Family	Location	Length	Method