Web Server

PlantDeepSEA

PlantDeepSEA is a webserver based on deep learning models of chromatin accessibility for multiple plant species. It can predict the impact of genomic variants on chromatin accessibility in multiple tissues. Therefore, it can be used to prioritize genomic variants and discover high-impact cis-regulatory sites within a sequence.

Citation: Hu Zhao#, Zhuo Tu#, Yinmeng Liu, Zhanxiang Zong, Jiacheng Li, Hao Liu, Feng Xiong, Jinling Zhan, Xuehai Hu and Weibo Xie* (2021). PlantDeepSEA, a deep learning-based web service to predict the regulatory effects of genomic variants in plants. Nucleic Acids Research, doi: 10.1093/nar/gkab383

2025-01-24

Database

BnaScope

BnaScope is a comprehensive genomic resource dedicated to Brassica napus (rapeseed). It serves as a central hub for the oilseed rape research community, anchored by the gap-free reference genomes of two elite accessions: ZS11 (Zhongshuang 11) and Westar. The database provides high-quality structural annotations for 101,387 genes in ZS11 and 99,423 genes in Westar, establishing a robust foundation for functional genomics and molecular breeding.

2026-01-16

PV2F - Plant Variant to Function Database

PV2F (https://rgmi.hzau.edu.cn/pv2f), a living knowledge hub for PV2F research. This platform aggregates and curates over 250 relevant databases and 910 publications. Uniquely, it offers an intelligent Q&A module, enabling users to interactively interpret this vast body of plant V2F resources.