Xu Han, Zhanxiang Zong, Weidong Ning, Yuting Zhang, Zengdong Tan, Yunhao Liu, Yukun Song, Qiyuan Long, Yuyan Xiang, Shaoping Lu, Xuan Yao, Hu Zhao, Liang Guo. Exploring the oasis of plant genomes: From genetic variations to function and beyond. Molecular Plant. https://doi.org/10.1016/j.molp.2026.05.014
该综述系统阐述了植物遗传变异功能解析（Variation-to-Function，V2F）的最进展，前瞻性地提出了“功能等位基因选择”（Functional Allele Selection，FAS）育种框架，为智能设计育种时代的位点选择和落地应用提供了系统性参考。
新闻稿：https://news.hzau.edu.cn/info/1010/72728.htm
Bo Wang, Zhanxiang Zong, Shaochen Jia, Xu Han, Liang Guo, Hu Zhao. PlantSetDelta: Mining regulatory features to enable interpretable gene set analysis in plants. Plant Communications. 10.1016/j.xplc.2026.101847
PlantSetDelta是一个面向植物基因集比较分析的可解释调控特征解析框架，能够识别任意两组差异基因集背后的序列决定因素，包括顺式调控区的k-mer特征和特定的转录因子结合特征。
Zhang Y, Liu Y, Zong Z, Guo L, Shen W, Zhao H.. Integrative omics analysis reveals the genetic basis of fatty acid composition in Brassica napus seeds. Genome Biology. https://doi.org/10.1186/s13059-025-03558-x
该研究通过多组学关联分析解析了甘蓝型油菜脂肪酸组成的遗传基础，克隆并验证了四个影响油菜脂肪酸组成的基因。
Peng Cheng, Hu Zhao, Songyao Zhang, Zhanxiang Zong, Chengxiang Li, Luchang Ming, Weibo Xie, Hao Yu. Feedback regulation of m6A modification creates local auxin maxima essential for rice microsporogenesis. Developmental Cell. https://doi.org/10.1016/j.devcel.2024.12.034
该研究揭示了水稻m6A甲基化转移酶复合体重要成员OsFIP37与生长素生物合成之间的正反馈调控机制，该机制在水稻花药雄性减数分裂过程中对局部生长素最大值的形成起关键作用。
Zengdong Tan; Xu Han; Cheng Dai; Shaoping Lu; Hanzi He; Xuan Yao; Peng Chen; Chao Yang; Lun Zhao; Qing‐Yong Yang; Jun Zou; Jing Wen; Dengfeng Hong; Chao Liu; Xianhong Ge; Chuchuan Fan; Bing Yi; Chunyu Zhang; Chaozhi Ma; Kede Liu; Jinxiong Shen; Jinxing Tu; Guangsheng Yang; Tingdong Fu; Liang Guo; Hu Zhao. Functional genomics of Brassica napus: Progresses, challenges, and perspectives. Journal of Integrative Plant Biology. https://doi.org/10.1111/jipb.13635
该研究概述了近年来油菜功能基因组学的研究进展，并指出了未来面临的挑战和发展前景
Zengdong Tan; Yan Peng; Yao Xiong; Feng Xiong; Yuting Zhang; Ning Guo; Zhuo Tu; Zhanxiang Zong; Xiaokun Wu; Jiang Ye; Chunjiao Xia; Tao Zhu; Yinmeng Liu; Hongxiang Lou; Dongxu Liu; Shaoping Lu; Xuan Yao; Kede Liu; Rod J. Snowdon; Agnieszka A. Golicz; Weibo Xie; Liang Guo; Hu Zhao. Comprehensive transcriptional variability analysis reveals gene networks regulating seed oil content of Brassica napus. Genome Biology. https://doi.org/10.1186/s13059-022-02801-z
该研究全面描述了油菜种子发育过程中转录组变异调控图谱，并结合机器学习与深度学习算法挖掘了油菜种子含油量调控新基因，研究结果为多倍体植物的不对称调控提供了借鉴。
Yuting Zhang; Hui Zhang; Hu Zhao; Yefan Xia; Xiangbo Zheng; Ruyi Fan; Zengdong Tan; Chenhua Duan; Yansong Fu; Long Li; Jiang Ye; Shan Tang; Honghong Hu; Weibo Xie; Xuan Yao; Liang Guo. Multi-omics analysis dissects the genetic architecture of seed coat content in Brassica napus. Genome Biology. https://doi.org/10.1186/s13059-022-02647-5
BibTeXZhao, Hu; Li, Jiacheng; Yang, Ling; Qin, Gang; Xia, Chunjiao; Xu, Xingbing; Su, Yangmeng; Liu, Yinmeng; Ming, Luchang; Chen, Ling-Ling; Xiong, Lizhong; Xie, Weibo. An inferred functional impact map of genetic variants in rice. Molecular Plant. https://doi.org/10.1016/j.molp.2021.06.025
BibTeXZhao, Hu; Tu, Zhuo; Liu, Yinmeng; Zong, Zhanxiang; Li, Jiacheng; Liu, Hao; Xiong, Feng; Zhan, Jinling; Hu, Xuehai; Xie, Weibo. PlantDeepSEA, a deep learning-based web service to predict the regulatory effects of genomic variants in plants. Nucleic Acids Research. https://doi.org/10.1093/nar/gkab383
BibTeXTang, Shan; Zhao, Hu; Lu, Shaoping; Yu, Liangqian; Zhang, Guofang; Zhang, Yuting; Yang, Qing-Yong; Zhou, Yongming; Wang, Xuemin; Ma, Wei; Xie, Weibo; Guo, Liang. Genome- and transcriptome-wide association studies provide insights into the genetic basis of natural variation of seed oil content in Brassica napus. Molecular Plant. https://doi.org/10.1016/j.molp.2020.12.003
BibTeXZhao Hu; Yao Wen; Ouyang Yidan; Yang Wanneng; Wang Gongwei; Lian Xingming; Xing Yongzhong; Chen Lingling; Xie Weibo. RiceVarMap: a comprehensive database of rice genomic variations. Nucleic Acids Research. https://doi.org/10.1093/nar/gku894
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